RosBREEDSNP_SNP_AG_23651920_Lg6_220101_MAF50_220101_exon1, RosBREEDSNP_SNP_AG_23651920_Lg6_220101_MAF50_220101_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_23651920_Lg6_220101_MAF50_220101_exon1
dbSNP IDss475876016
SNP Array ID
480K SNP array for apple:AX-115182256
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_23651920_Lg6_220101_MAF50_220101_exon1
20K SNP array for apple:RosBREEDSNP_SNP_AG_23651920_Lg6_220101_MAF50_220101_exon1
50K SNP array for apple:AX-105222631
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_AG_23651920_Lg6_220101_MAF50_220101_exon1.probe: GGGGGTAGGGTGTGGGCTAAACTTCATAATGGGCTAGCAATGATATGATT
5' Flanking SequenceTATATTCATCTTTACTTGTAAGTGAAAAATCTTAATTTTGATTCTCGCAAAAAGCGAATT T
3' Flanking SequenceAATCATATCATTGCTAGCCCATTATGAAGTTTAGCCCACACCCTACCCCCTTAATAAAGA T
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-Honeycrisp_Consensus-F16N/A46.57RosBREEDSNP_SNP_AG_23651920_Lg6_220101_MAF50_220101_exon1View
Sequence
>RosBREEDSNP_SNP_AG_23651920_Lg6_220101_MAF50_220101_exon1 ID=RosBREEDSNP_SNP_AG_23651920_Lg6_220101_MAF50_220101_exon1; Name=RosBREEDSNP_SNP_AG_23651920_Lg6_220101_MAF50_220101_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
AAATCTTAATTTTGATTCTCGCAAAAAGCGAATTT[A/G]AATCATATCA
TTGCTAGCCCATTATGAAGTTTAGC
Alignments
Feature NameTypeLocationAnalysis
MDC021311.216 contig MDC021311.216:1214..1214. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr06 chromosome Chr06:35527927..35527927+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr06 chromosome Chr06:35527929..35527929. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation