RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1, RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1
Aliasss475880294
rs267613239
a475880294
SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1
AX-105179451
dbSNP IDss475880294
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1
50K SNP array for apple:RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1
TypeSNP
SNP AllelesA/C
5' Flanking SequenceACTGAGAATAGAGTATTGATTTGGGAGAGTTGTTG
3' Flanking SequenceTCTTATAGTACAAAAATATTCCCTTAGGCTCCAT
SpeciesMalus x domestica
PolymorphismP_ RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1-56.697Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1 ID=RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1|Name=RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
ACTGAGAATAGAGTATTGATTTGGGAGAGTTGTTGMTCTTATAGTACAAA
AATATTCCCTTAGGCTCCAT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201311N/A62.7RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1View
2Apple-M432-2013-physical-Malus-domestica11N/A34267142RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1View
3Apple-Honeycrisp_Consensus-F111N/A56.7RosBREEDSNP_SNP_CA_34267142_Lg11_02910_MAF10_1657398_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC024251.13 contig MDC024251.13:2848..2848. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr11 chromosome Chr11:37690371..37690371. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr11 chromosome Chr11:37690370..37690370. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation