GDsnp00348, GDsnp00348 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp00348
dbSNP IDss475882628
SNP Array ID
IRSC 9K SNP array for apple:GDsnp00348
50K SNP array for apple:AX-105194473
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAAAATATGCGATTTTGGACTAGCTCGAGTCACCTC
3' Flanking SequenceGAGACTGATTTTATGACTGAGTATGTTGTTACCA
SpeciesMalus x domestica
Publication[view all]
ContactCindy F. Verdu
Contact
NameDetails
Cindy F. Verdu
First name:Cindy
Last name:Verdu
Title:Researcher
Institution:INRA
Address:INRA, UMR1345 Institut de Recherche en Horticulture et Semences, Beaucouze, France
Country:France
Email:cindyverdu@gmail.com
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2014Verdu CF, Guyot S, Childebrand N, Bahut M, Celton J-M, Gaillard S, Lasserre-Zuber P, Troggio M, Guilet D, Laurens F. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS ONE. 2014; 9(10):e107103.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map2N/A0GDsnp00348View
2Apple-C16xC17-F1-20122N/A0.83GDsnp00348View
3Apple-X3259X3263-F12N/A7.15GDsnp00348View
4Apple-Honeycrisp_Consensus-F12N/A0GDsnp00348View
5Apple-JGxWSH-F1LG2N/A23.3GDsnp00348View
6Apple-WSH-F1LG2N/A26.6GDsnp00348View
7Apple-FjxPL-F1-2013LG2N/A3.28GDsnp00348View
8Apple-BB-F12N/A0GDsnp00348View
9Apple-NCZFBB-consensus2N/A0GDsnp00348View
10Apple-X5210X8402-F1-X5210LG2N/A0GD_SNP00348View
11Apple-GDxBr-F1-2013LG2N/A7.87GD_SNP00348View
Sequence
>GDsnp00348 ID=GDsnp00348; Name=GDsnp00348; organism=Malus x domestica; type=genetic_marker; length=201bp
CTGCAAATGTTCTGCACAGGGACTTAAAACCTAGCAATCTTCTCCTAAAT
GCCAATTGTGACTTAAAAATATGCGATTTTGGACTAGCTCGAGTCACCTC
RGAGACTGATTTTATGACTGAGTATGTTGTTACCAGATGGTACCGTGCCC
CAGAGCTACTGTTAAACTCTTCAGATTACACTGCAGCTATTGATGTATGG
T
Alignments
Feature NameTypeLocationAnalysis
MDC013255.331 contig MDC013255.331:6866..6866. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr15 chromosome Chr15:10940427..10940527+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:285457..285557+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:285509..285509. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:285507..285507. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation