RosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1, RosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1
dbSNP IDss475883090
SNP Array ID
480K SNP array for apple:AX-115193245
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1
50K SNP array for apple:AX-105214070
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1.probe: TGTAAGTTGGTTTATTCCCCATATTGCCAATTAATTTTATGATGAAACCT
5' Flanking SequenceATAGACTTGTATGTAAGTTGGTTTATTCCCCATATTGCCAATTAATTTTATGATGAAACC T
3' Flanking SequenceAACTTTCTTAAAAAGCTATCTTAAATAGTCAAAGCACTTAAATCTCCTTGCACTATACAC T
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20133N/A3.1RosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1View
2Apple-M432-2013-physical-Malus-domestica3N/A1611891RosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1View
3Apple-RGTxGD-F1-2015RGT_3N/A1.97RosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1View
Sequence
>RosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1 ID=RosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1; Name=RosBREEDSNP_SNP_CT_1611891_Lg3_EH034548_MAF30_1687561_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
TCCCCATATTGCCAATTAATTTTATGATGAAACCT[C/T]AACTTTCTTA
AAAAGCTATCTTAAATAGTCAAAGC
Alignments
Feature NameTypeLocationAnalysis
MDC012189.160 contig MDC012189.160:9506..9506. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr03 chromosome Chr03:967939..967939+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation