RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1, RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1
dbSNP IDss475879895
SNP Array ID
480K SNP array for apple:AX-105191916
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1
20K SNP array for apple:RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1
50K SNP array for apple:AX-105191916
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1.probe: GAATTACAGGTTCGGTAAGCTGAACAAGGAGATCAATCCAGAGAAGTGTA
5' Flanking SequenceGTGGAAGGAAAGAATTACAGGTTCGGTAAGCTGAACAAGGAGATCAATCCAGAGAAGTGT A
3' Flanking SequenceGGTGCTGGTTAAGCCTACAAGGGCTGTTATCAATTTGGCTAAAACTTCAAAGGATTACTG G
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F110N/A71b475879895View
2Apple-Honeycrisp_Consensus-F110N/A61.67RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1View
3Apple-BB-F110N/A63.25RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1View
4Apple-NC-F110N/A83.53RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1View
5Apple-NCZFBB-consensus10N/A83.5RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1View
6Apple-ZF-F110N/A89.35RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1View
Sequence
>RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1 ID=RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1; Name=RosBREEDSNP_SNP_AG_29917745_Lg10_00346_MAF30_695159_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
TAAGCTGAACAAGGAGATCAATCCAGAGAAGTGTA[A/G]GGTGCTGGTT
AAGCCTACAAGGGCTGTTATCAATT
Alignments
Feature NameTypeLocationAnalysis
MDC008274.347 contig MDC008274.347:3467..3467. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr10 chromosome Chr10:35618293..35618293+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation