RosBREEDSNP_SNP_GT_20005208_Lg17_01298_MAF20_1629877_exon1, RosBREEDSNP_SNP_GT_20005208_Lg17_01298_MAF20_1629877_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GT_20005208_Lg17_01298_MAF20_1629877_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:

RosBREEDSNP_SNP_GT_20005208_Lg17_01298_MAF20_1629877_exon1

Type

SNP

SNP Alleles

T/G

Species

Publication

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	17	N/A	44.8	RosBREEDSNP_SNP_GT_20005208_Lg17_01298_MAF20_1629877_exon1	View
2	Apple-M432-2013-physical-Malus-domestica	17	N/A	20005208	RosBREEDSNP_SNP_GT_20005208_Lg17_01298_MAF20_1629877_exon1	View

Alignments

Feature Name	Type	Location	Analysis
MDC018995.225	contig	MDC018995.225:17476..17476.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr17	chromosome	Chr17:27467883..27467883.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation