GDsnp01735, GDsnp01735 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp01735
dbSNP IDss475882631
SNP Array ID
IRSC 9K SNP array for apple:GDsnp01735
50K SNP array for apple:AX-105174299
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTACTAAAGTGACTTGCAAAAATAAAAACTG
3' Flanking SequenceAAAAGTT
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map2N/A3.7GDsnp01735View
2Apple-M432-2013-physical-Malus-domestica2N/A1905345GDsnp01735View
3Apple-FjxPL-F1-2013LG2N/A5.83GDsnp01735View
Sequence
>GDsnp01735 ID=GDsnp01735; Name=GDsnp01735; organism=Malus x domestica; type=genetic_marker; length=38bp
TACTAAAGTGACTTGCAAAAATAAAAACTGRAAAAGTT
Alignments
Feature NameTypeLocationAnalysis
MDC016517.72 contig MDC016517.72:6839..6839. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr02 chromosome Chr02:844847..844947- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:844897..844897. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation