RosBREEDSNP_SNP_AG_699123_Lg14_AT2_MAF50_1661905_exon1, RosBREEDSNP_SNP_AG_699123_Lg14_AT2_MAF50_1661905_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_699123_Lg14_AT2_MAF50_1661905_exon1
dbSNP IDss475880977
SNP Array ID
480K SNP array for apple:AX-115182341
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_699123_Lg14_AT2_MAF50_1661905_exon1
20K SNP array for apple:RosBREEDSNP_SNP_AG_699123_Lg14_AT2_MAF50_1661905_exon1
50K SNP array for apple:AX-105190405
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_AG_699123_Lg14_AT2_MAF50_1661905_exon1.probe: TAAGATGAGAGAAAAACGGTTAAGGTGGTTTGGACATGTGAATTGAAGAC
5' Flanking SequenceTATACCCTTTTTGCCTTAAGCTTCTGCTTCATAATTGCATCTTCTAACCGAAACATTTAT T
3' Flanking SequenceGTCTTCAATTCACATGTCCAAACCACCTTAACCGTTTTTCTCTCATCTTATCTTCAATTA C
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-Honeycrisp_Consensus-F114N/A0.4RosBREEDSNP_SNP_AG_699123_Lg14_AT2_MAF50_1661905_exon1View
2Apple-RosBREED-3.9K-201914N/A0.4RosBREEDSNP_SNP_AG_699123_Lg14_AT2_MAF50_1661905_exon1View
Sequence
>RosBREEDSNP_SNP_AG_699123_Lg14_AT2_MAF50_1661905_exon1 ID=RosBREEDSNP_SNP_AG_699123_Lg14_AT2_MAF50_1661905_exon1; Name=RosBREEDSNP_SNP_AG_699123_Lg14_AT2_MAF50_1661905_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
CTTCATAATTGCATCTTCTAACCGAAACATTTATT[A/G]GTCTTCAATT
CACATGTCCAAACCACCTTAACCGT
Alignments
Feature NameTypeLocationAnalysis
MDC007970.422 contig MDC007970.422:5553..5553. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr14 chromosome Chr14:997970..997970- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation