RosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3, RosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3
Aliasss475876663
rs267609610
a475876663
SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3
AX-105223552
dbSNP IDss475876663
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3
50K SNP array for apple:RosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAAATGTAATTTTTCCTAATTTACCTTTACATTAGG
3' Flanking SequenceAGGCCCCAATACTTTGCTAGTGTCTTCCATTGAT
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3RosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3 ID=RosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3|Name=RosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3|organism=Malus x domestica|type=genetic_marker|length=70bp
AAATGTAATTTTTCCTAATTTACCTTTACATTAGGRAGGCCCCAATACTT
TGCTAGTGTCTTCCATTGAT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201314N/A20.1RosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3View
2Apple-M432-2013-physical-Malus-domestica1N/A5852068RosBREEDSNP_SNP_GA_5852068_Lg1_00152_MAF20_MDP0000220135_exon3View
Alignments
Feature NameTypeLocationAnalysis
MDC019151.260 contig MDC019151.260:13167..13167. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr17 chromosome Chr17:13681769..13681769. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr17 chromosome Chr17:13681767..13681767. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation