RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5, RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5
dbSNP IDss475879742
SNP Array ID
480K SNP array for apple:AX-105189217
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5
20K SNP array for apple:RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5
50K SNP array for apple:AX-105189217
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5.probe: AGGATCCTTGTTATCAGTCTAAAAGGTACTACCTTTGGGTGCTGCTGAAG
5' Flanking SequenceAATGTAAACAAAGGATCCTTGTTATCAGTCTAAAAGGTACTACCTTTGGGTGCTGCTGAA G
3' Flanking SequenceAATTGCGCAAACCTCCTATACAAACATCAAGAAATAAAAATCAAATTCTTCGGATAGCCT A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-Honeycrisp_Consensus-F110N/A34.88RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5View
2Apple-RosBREED-3.9K-201910N/A34.88RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5View
3Apple-NC-F110N/A45.68RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5View
4Apple-NCZFBB-consensus10N/A47.94RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5View
5Apple-ZF-F110N/A54.6RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5View
Sequence
>RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5 ID=RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5; Name=RosBREEDSNP_SNP_CT_14704244_Lg10_01267_MAF40_MDP0000223787_exon5; organism=Malus x domestica; type=genetic_marker; length=75bp
AGTCTAAAAGGTACTACCTTTGGGTGCTGCTGAAG[C/T]AATTGCGCAA
ACCTCCTATACAAACATCAAGAAAT
Alignments
Feature NameTypeLocationAnalysis
MDC013858.410 contig MDC013858.410:2384..2384. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr10 chromosome Chr10:22407432..22407432+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation