RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2, RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2
Aliasss475877704
rs267610650
a475877704
SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2
AX-105223155
dbSNP IDss475877704
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2
50K SNP array for apple:RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTCCTTATCGTTTCGGCCTCTGATATTACCTGAGCA
3' Flanking SequenceGTGACTTTGCGAGTACAAGTACCTTTCAACAGCA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2 ID=RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2|Name=RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2|organism=Malus x domestica|type=genetic_marker|length=70bp
TCCTTATCGTTTCGGCCTCTGATATTACCTGAGCAYGTGACTTTGCGAGT
ACAAGTACCTTTCAACAGCA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201311N/A46.4RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2View
2Apple-M432-2013-physical-Malus-domestica3N/A24565225RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2View
Alignments
Feature NameTypeLocationAnalysis
MDC020404.89 contig MDC020404.89:18902..18902. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr03 chromosome Chr03:23537883..23537883. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr03 chromosome Chr03:23537882..23537882. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation