RosBREEDSNP_SNP_AG_20963489_Lg4_00686_MAF10_1682093_exon6, RosBREEDSNP_SNP_AG_20963489_Lg4_00686_MAF10_1682093_exon6 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_20963489_Lg4_00686_MAF10_1682093_exon6
dbSNP IDss475878024
SNP Array ID
480K SNP array for apple:AX-115182242
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_20963489_Lg4_00686_MAF10_1682093_exon6
20K SNP array for apple:RosBREEDSNP_SNP_AG_20963489_Lg4_00686_MAF10_1682093_exon6
50K SNP array for apple:AX-105199102
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_AG_20963489_Lg4_00686_MAF10_1682093_exon6.probe: GTCTAAGAATTCCGCTGAAATCTCAGGTACATATACTGCTCTTCAGCCGG
5' Flanking SequenceTAGCCATTTGTAACATCAAACATACCTCAAAGTGAGGTAGCTGATCAGATTTGAGATAGA C
3' Flanking SequenceCCGGCTGAAGAGCAGTATATGTACCTGAGATTTCAGCGGAATTCTTAGACCTTCTAAAAA T
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-RGTxGD-F1-2015GD_4N/A43.82RosBREEDSNP_SNP_AG_20963489_Lg4_00686_MAF10_1682093_exon6View
2Apple-Honeycrisp_Consensus-F14N/A47.47RosBREEDSNP_SNP_AG_20963489_Lg4_00686_MAF10_1682093_exon6View
Sequence
>RosBREEDSNP_SNP_AG_20963489_Lg4_00686_MAF10_1682093_exon6 ID=RosBREEDSNP_SNP_AG_20963489_Lg4_00686_MAF10_1682093_exon6; Name=RosBREEDSNP_SNP_AG_20963489_Lg4_00686_MAF10_1682093_exon6; organism=Malus x domestica; type=genetic_marker; length=75bp
TCAAAGTGAGGTAGCTGATCAGATTTGAGATAGAC[A/G]CCGGCTGAAG
AGCAGTATATGTACCTGAGATTTCA
Alignments
Feature NameTypeLocationAnalysis
MDC006283.261 contig MDC006283.261:8648..8648. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr04 chromosome Chr04:28076908..28076908- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation