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Marker Overview
Name | RosBREEDSNP_SNP_AC_2492599_Lg10_01909_MAF20_822485_exon1 |
dbSNP ID | ss475879623 |
SNP Array ID | 480K SNP array for apple: | AX-115182176 | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_AC_2492599_Lg10_01909_MAF20_822485_exon1 | 20K SNP array for apple: | RosBREEDSNP_SNP_AC_2492599_Lg10_01909_MAF20_822485_exon1 |
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Type | SNP |
SNP Alleles | A/C |
Probe 1 | RosBREEDSNP_SNP_AC_2492599_Lg10_01909_MAF20_822485_exon1.probe: GGGTTTTGAATTCCAATTCCTCCTCCTCCTCCGCCTTCTTCAAATCTCAA |
5' Flanking Sequence | CCTCCCATCGAGGGTTTTGAATTCCAATTCCTCCTCCTCCTCCGCCTTCTTCAAATCTCA
A |
3' Flanking Sequence | CTTTGCTGTGCGATTTGGAATCGGAACCCTAACTATCGAGCCTTGGATCTTAAAGGGTTC
C |
Species | Malus x domestica |
Publication | [view all] |
Contact | Michela Troggio
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
Year | Publication |
2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
Sequence
>RosBREEDSNP_SNP_AC_2492599_Lg10_01909_MAF20_822485_exon1 ID=RosBREEDSNP_SNP_AC_2492599_Lg10_01909_MAF20_822485_exon1; Name=RosBREEDSNP_SNP_AC_2492599_Lg10_01909_MAF20_822485_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp ATTCCTCCTCCTCCTCCGCCTTCTTCAAATCTCAA[A/C]CTTTGCTGTG CGATTTGGAATCGGAACCCTAACTA
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