RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1, RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1
dbSNP IDss475881223
SNP Array ID
480K SNP array for apple:AX-105198317
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1
50K SNP array for apple:AX-105198317
TypeSNP
SNP AllelesA/C
Probe 1RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1.probe: GCAGTGGAATTTCTCAACCCATGTTTCTGAAAAGCAGTGAGATGCCATGA
5' Flanking SequenceAGAGTCTTTTGGCAGTGGAATTTCTCAACCCATGTTTCTGAAAAGCAGTGAGATGCCATG A
3' Flanking SequenceGATTTTATTAATAACATAAAAAAGTTTATCTTTAAGCTAACAAAATAGTTTAAAAAGTAA A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-MM-F114N/A51.6b475881223View
2Apple-Honeycrisp_Consensus-F114N/A63.9RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1View
3Apple-BB-F114N/A59.64RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1View
4Apple-NC-F114N/A74.32RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1View
5Apple-NCZFBB-consensus14N/A72.02RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1View
6Apple-ZF-F114N/A77.15RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1View
7Apple-consensus-Allard-2016LG14N/A64RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1View
Sequence
>RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1 ID=RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1; Name=RosBREEDSNP_SNP_CA_33250295_Lg14_01548_MAF50_406870_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
AACCCATGTTTCTGAAAAGCAGTGAGATGCCATGA[A/C]GATTTTATTA
ATAACATAAAAAAGTTTATCTTTAA
Alignments
Feature NameTypeLocationAnalysis
MDC012525.219 contig MDC012525.219:4358..4358. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr14 chromosome Chr14:31638018..31638018+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation