GDsnp02407, GDsnp02407 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp02407
Aliasss475882358
rs267615303
b475882358
AX-105174271
dbSNP IDss475882358
SNP Array ID
IRSC 9K SNP array for apple:GDsnp02407
50K SNP array for apple:GDsnp02407
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGGGCAGGTAAGTTCAAATAAGGGTCTGAGCTCATA
3' Flanking SequenceGTTAGTACTCTGTCATTGGCATGGGC
SpeciesMalus x domestica
Publication[view all]
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
GDsnp02407GDsnp02407Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>GDsnp02407 ID=GDsnp02407|Name=GDsnp02407|organism=Malus x domestica|type=genetic_marker|length=62bp
GGGCAGGTAAGTTCAAATAAGGGTCTGAGCTCATAYGTTAGTACTCTGTC
ATTGGCATGGGC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map11N/A45GDsnp02407View
2Apple-M432-201311N/A47.3GDsnp02407View
3Apple-M432-2013-physical-Malus-domestica11N/A24599813GDsnp02407View
Alignments
Feature NameTypeLocationAnalysis
MDC007567.317 contig MDC007567.317:6383..6383. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr11 chromosome Chr11:29221278..29221378- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr11 chromosome Chr11:29221329..29221329. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr11 chromosome Chr11:29221328..29221328. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation