GDsnp00077, GDsnp00077 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp00077
dbSNP IDss475882638
SNP Array ID
480K SNP array for apple:AX-105184990
IRSC 9K SNP array for apple:GDsnp00077
20K SNP array for apple:GDsnp00077
50K SNP array for apple:AX-105184990
TypeSNP
SNP AllelesA/G
Probe 1GDsnp00077.probe: GGTTGGAGGAGGAGGAGGAGATTATCGACCATGACGTCTCTGAAGGAGCT
5' Flanking SequenceTTTGAATTTNNTTATTTATTTTGGTACCCTGTGAAATTGGAACAGTTTGGGGTTGGAGGA GGAGGAGGAGATTATCGACCATGACGTCTCTGAAGGAGCT
3' Flanking SequenceATTCCGCCGCCGGCGGCAACCACAACGACTTATTACGACCACTCGAACGATCCGTGGTTC AAGCAGCGGTTCAGTTCTGCCGAGGCAGAAAGATCTGCAG
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2014Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2016Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map2N/A13.7GDsnp00077View
2Apple-RGTxGD-F1-2015GD_2N/A14.86GDsnp00077View
3Apple-RosBREED-3.9K-20192N/A10.71GDsnp00077View
4Apple-NCZFBB-consensus2N/A12.56GDsnp00077View
5Apple-ZF-F12N/A6.88GDsnp00077View
6Apple-consensus-Allard-2016LG2N/A15.03GDsnp00077View
7Apple-MM-F12N/A14.7a475882638View
8Apple-Honeycrisp_Consensus-F12N/A10.71GDsnp00077View
Sequence
>GDsnp00077 ID=GDsnp00077; Name=GDsnp00077; organism=Malus x domestica; type=genetic_marker; length=75bp
AGGAGATTATCGACCATGACGTCTCTGAAGGAGCT[A/G]ATTCCGCCGC
CGGCGGCAACCACAACGACTTATTA