RosBREEDSNP_SNP_AC_12441299_Lg10_00176_MAF40_MDP0000196406_exon4, RosBREEDSNP_SNP_AC_12441299_Lg10_00176_MAF40_MDP0000196406_exon4 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AC_12441299_Lg10_00176_MAF40_MDP0000196406_exon4
dbSNP IDss475879705
SNP Array ID
480K SNP array for apple:AX-115182159
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AC_12441299_Lg10_00176_MAF40_MDP0000196406_exon4
20K SNP array for apple:RosBREEDSNP_SNP_AC_12441299_Lg10_00176_MAF40_MDP0000196406_exon4
50K SNP array for apple:AX-105205873
TypeSNP
SNP AllelesT/G
Probe 1RosBREEDSNP_SNP_AC_12441299_Lg10_00176_MAF40_MDP0000196406_exon4.probe: CGCGATGTAGAACCTGGGGGCAAATCTATCTTTTTGAAGGGCAGACAACA
5' Flanking SequenceCTGGCGAAGCCGAAGAGCCAAGCAAGCGGCGGGGTCAACACCGACGCAAGAGATGATCAA C
3' Flanking SequenceTGTTGTCTGCCCTTCAAAAAGATAGATTTGCCCCCAGGTTCTACATCGCGGCAAACACTG A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-Honeycrisp_Consensus-F110N/A17.23RosBREEDSNP_SNP_AC_12441299_Lg10_00176_MAF40_MDP0000196406_exon4View
Sequence
>RosBREEDSNP_SNP_AC_12441299_Lg10_00176_MAF40_MDP0000196406_exon4 ID=RosBREEDSNP_SNP_AC_12441299_Lg10_00176_MAF40_MDP0000196406_exon4; Name=RosBREEDSNP_SNP_AC_12441299_Lg10_00176_MAF40_MDP0000196406_exon4; organism=Malus x domestica; type=genetic_marker; length=75bp
CGGCGGGGTCAACACCGACGCAAGAGATGATCAAC[A/C]TGTTGTCTGC
CCTTCAAAAAGATAGATTTGCCCCC
Alignments
Feature NameTypeLocationAnalysis
MDC013363.304 contig MDC013363.304:12380..12380. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr10 chromosome Chr10:8930121..8930121+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr10 chromosome Chr10:8930123..8930123. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation