RosBREEDSNP_SNP_CT_3581379_Lg7_01717_MAF50_1654084_exon3, RosBREEDSNP_SNP_CT_3581379_Lg7_01717_MAF50_1654084_exon3 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_3581379_Lg7_01717_MAF50_1654084_exon3
dbSNP IDss475882970
SNP Array ID
480K SNP array for apple:AX-115182517
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_3581379_Lg7_01717_MAF50_1654084_exon3
20K SNP array for apple:RosBREEDSNP_SNP_CT_3581379_Lg7_01717_MAF50_1654084_exon3
50K SNP array for apple:AX-105198419
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_CT_3581379_Lg7_01717_MAF50_1654084_exon3.probe: TAATGTCATAATACATCTTTAGATGAATATTGCAGATGGAACTGTTGTTA
5' Flanking SequenceACAGAAGGGAGAACCATTCAATTTTTCAGAAATAAATAATGATGATGAAAAGAACAATAT G
3' Flanking SequenceTAACAACAGTTCCATCTGCAATATTCATCTAAAGATGTATTATGACATTACAATTGTCAA C
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20137N/A6.2RosBREEDSNP_SNP_CT_3581379_Lg7_01717_MAF50_1654084_exon3View
2Apple-M432-2013-physical-Malus-domestica7N/A3581379RosBREEDSNP_SNP_CT_3581379_Lg7_01717_MAF50_1654084_exon3View
Sequence
>RosBREEDSNP_SNP_CT_3581379_Lg7_01717_MAF50_1654084_exon3 ID=RosBREEDSNP_SNP_CT_3581379_Lg7_01717_MAF50_1654084_exon3; Name=RosBREEDSNP_SNP_CT_3581379_Lg7_01717_MAF50_1654084_exon3; organism=Malus x domestica; type=genetic_marker; length=75bp
CAGAAATAAATAATGATGATGAAAAGAACAATATG[C/T]TAACAACAGT
TCCATCTGCAATATTCATCTAAAGA
Alignments
Feature NameTypeLocationAnalysis
MDC004013.431 contig MDC004013.431:30484..30484. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr07 chromosome Chr07:3858035..3858035. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr07 chromosome Chr07:3775445..3775445. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation