RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2, RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2
Aliasss475883431
rs267616190
b475883431
SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2
R_1555360_L2_PA
dbSNP IDss475883431
SNP Array ID
480K SNP array for apple:RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2
20K SNP array for apple:RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2
50K SNP array for apple:RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2
TypeSNP
SNP AllelesT/G
Probe 1RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2.probe: TTTGACTATTTTTCTCATTAATACCCAAAGTTGACTCCCTCTATTACCAT
5' Flanking SequenceGTTTTTCATATTTTGACTATTTTTCTCATTAATACCCAAAGTTGACTCCCTCTATTACCA T
3' Flanking SequenceAAAAAGTTGAAACTCTCGCTTCAGAAAGATACACAAGGCAAAATTCTTTATCGTTGCTCC G
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2 ID=RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2|Name=RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2|organism=Malus x domestica|type=genetic_marker|length=75bp
CATTAATACCCAAAGTTGACTCCCTCTATTACCAT[G/T]AAAAAGTTGA
AACTCTCGCTTCAGAAAGATACACA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20132N/A2.9RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2View
2Apple-M432-2013-physical-Malus-domestica2N/A1555360RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2View
Alignments
Feature NameTypeLocationAnalysis
MDC015445.356 contig MDC015445.356:8866..8866. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr02 chromosome Chr02:560771..560771+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:559053..559053- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:560772..560772. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation