RosBREEDSNP_SNP_CT_14028001_Lg14_CXE5_MAF30_MDP0000283091_exon1, RosBREEDSNP_SNP_CT_14028001_Lg14_CXE5_MAF30_MDP0000283091_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_14028001_Lg14_CXE5_MAF30_MDP0000283091_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_14028001_Lg14_CXE5_MAF30_MDP0000283091_exon1
50K SNP array for apple:	AX-105175040

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

ACATTTGCAACGCGAGTGGGGAAGTAGTTTTGCAA

3' Flanking Sequence

CCATCATCCAAAAGATCTCTGTTTCTCCTTCCTG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_CT_14028001_Lg14_CXE5_MAF30_MDP0000283091_exon1 ID=RosBREEDSNP_SNP_CT_14028001_Lg14_CXE5_MAF30_MDP0000283091_exon1; Name=RosBREEDSNP_SNP_CT_14028001_Lg14_CXE5_MAF30_MDP0000283091_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
ACATTTGCAACGCGAGTGGGGAAGTAGTTTTGCAAYCCATCATCCAAAAG
ATCTCTGTTTCTCCTTCCTG

Alignments

Feature Name	Type	Location	Analysis
MDC008096.544	contig	MDC008096.544:3424..3424.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr17	chromosome	Chr17:7493155..7493155.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr17	chromosome	Chr17:28729227..28729227.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr17	chromosome	Chr17:28762471..28762471.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation