GDsnp02302, GDsnp02302 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp02302
dbSNP IDss475882280
SNP Array ID
480K SNP array for apple:AX-105220318
IRSC 9K SNP array for apple:GDsnp02302
20K SNP array for apple:GDsnp02302
50K SNP array for apple:AX-105220318
TypeSNP
SNP AllelesT/C
Probe 1GDsnp02302.probe: TGAAGCTAAACTGTCGTAGAGATTGTTGTGGCTCACCGGCTACATCCAAA
5' Flanking SequenceTGTGGCCACATTCTCAACCGTATCGAACAGTTATATGAAACATGGTGCCATGAAGCTAAA CTGTCGTAGAGATTGTTGTGGCTCACCGGCTACATCCAAA
3' Flanking SequenceGATACCATTCATTCATTCATTCATTTAAATCCATATTAGAACACACGCGTTCGAGAATTT AAGGAAGAATTAACAAATTGATAATCCGTCACTTGTTGCA
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2014Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2016Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-RGxBr-Royal Gala-F1LG1N/A26.9GDsnp02302View
2Apple_HCGA_F11N/A32.81GDsnp02302View
3Apple_HC64_F11N/A25.53GDsnp02302View
4Apple_HCMO_F11N/A26.69GDsnp02302View
5Apple_HGMM_Consenus1N/A31.15GDsnp02302View
6Apple Integrated map1N/A36.4GDsnp02302View
7Apple-RGTxGD-F1-2015GD_1N/A35.31GDsnp02302View
8Apple-Rg-F1-2014RG1N/A26.9GDsnp02302View
9Apple-RosBREED-3.9K-20191N/A25.82GDsnp02302View
10Apple-consensus-Allard-2016LG1N/A33.08GDsnp02302View
11Apple-Honeycrisp_Consensus-F11N/A25.82GDsnp02302View
Sequence
>GDsnp02302 ID=GDsnp02302; Name=GDsnp02302; organism=Malus x domestica; type=genetic_marker; length=75bp
GTAGAGATTGTTGTGGCTCACCGGCTACATCCAAA[C/T]GATACCATTC
ATTCATTCATTCATTTAAATCCATA