RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1, RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1
dbSNP IDss475876668
SNP Array ID
480K SNP array for apple:AX-105218154
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1
20K SNP array for apple:RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1
50K SNP array for apple:AX-105218154
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1.probe: TCAGATGTAAGCTCTGAACCATCAACTCCTATGTCTTCACAACTTATTCC
5' Flanking SequenceCTGTAACAGGAAGTGATGGGAACCTTTTAAGAGGGTCTGTCAATGGGCTGCCAACATAGT C
3' Flanking SequenceGGAATAAGTTGTGAAGACATAGGAGTTGATGGTTCAGAGCTTACATCTGAAAGTGATAAA C
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2014Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2016Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2012Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Pear-PM-F1-Moonglow1N/A0.59RosBREED_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1View
2Apple-MM-F11N/A0.6c475876668View
3Apple-Honeycrisp_Consensus-F11N/A0RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1View
4Apple-RosBREED-3.9K-20191N/A0RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1View
5Apple-NC-F11N/A0.22RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1View
6Apple-NCZFBB-consensus1N/A0.01RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1View
7Apple-ZF-F11N/A0.57RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1View
8Pear-PH-CG-2017LG1N/A2.04RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1View
Sequence
>RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1 ID=RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1; Name=RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
TTAAGAGGGTCTGTCAATGGGCTGCCAACATAGTC[C/T]GGAATAAGTT
GTGAAGACATAGGAGTTGATGGTTC