RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1, RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1
dbSNP IDss475881346
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1
50K SNP array for apple:AX-105178805
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCTAAGGGACATAAAGAATAGTAAGACGAGTGAGTA
3' Flanking SequenceGCTTATGATTTATCAGTCACACTTCCTATGTTGG
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201315N/A46.16RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1View
2Apple-M432-2013-physical-Malus-domestica15N/A6942588RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1View
3Apple-NC-F112N/A26.56RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1View
4Apple-NCZFBB-consensus12N/A21.57RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1View
Sequence
>RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1 ID=RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1; Name=RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
CTAAGGGACATAAAGAATAGTAAGACGAGTGAGTARGCTTATGATTTATC
AGTCACACTTCCTATGTTGG
Alignments
Feature NameTypeLocationAnalysis
MDC021166.276 contig MDC021166.276:14736..14736. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr12 chromosome Chr12:8847875..8847875. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr12 chromosome Chr12:8847873..8847873. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation