GDsnp01570, GDsnp01570 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp01570
dbSNP IDss475882321
SNP Array ID
480K SNP array for apple:AX-105197792
IRSC 9K SNP array for apple:GDsnp01570
20K SNP array for apple:GDsnp01570
50K SNP array for apple:AX-105197792
TypeSNP
SNP AllelesA/C
Probe 1GDsnp01570.probe: GTGATTTAGGTTGATGTGTGAGCCTGTGAGTGGTGAATAGCAGAGTACAG
5' Flanking SequenceGGGTAGGTAAACTCAAAAAAAAAAAAAAAAAAAAAANNNAAAAGGTGCATGTGATTTAGG TTGATGTGTGAGCCTGTGAGTGGTGAATAGCAGAGTACAG
3' Flanking SequenceAAATCATACGACGACGTTTGGAGCAATTGAAGTCAATATATATTGACTACCGAGTTCTGT CAATTCGAGAGGAGAGAGAGAGAGCGCGACCGACCGCCGC
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2014Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2011Micheletti D, Troggio M, Zharkikh A, Costa F, Malnoy M, Velasco R, Salvi S. Genetic diversity of the genus Malus and implications for linkage mapping with SNPs. Tree Genetics & Genomes. 2011; 7(4):857-868.
2016Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map10N/A64GDsnp01570View
2Apple-GB-F1LG_10N/A63.4GD_SNP01570View
3Apple-GDxBr-F1-2013LG10N/A63.44GD_SNP01570View
4Pear-PH-CG-2017LG10N/A30.12GDsnp01570View
Sequence
>GDsnp01570 ID=GDsnp01570; Name=GDsnp01570; organism=Malus x domestica; type=genetic_marker; length=75bp
GTGTGAGCCTGTGAGTGGTGAATAGCAGAGTACAG[A/C]AAATCATACG
ACGACGTTTGGAGCAATTGAAGTCA
Alignments
Feature NameTypeLocationAnalysis
MDC010071.398 contig MDC010071.398:27121..27121. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr10 chromosome Chr10:34569002..34569002+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation