RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2, RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2
dbSNP IDss475883918
SNP Array ID
480K SNP array for apple:AX-105185357
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2
20K SNP array for apple:RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2
50K SNP array for apple:AX-105185357
TypeSNP
SNP AllelesT/G
Probe 1RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2.probe: AGGAACTGGGCCACCGCGGAGGTGAGACAAGGAAGGAGCAGCTAGGTCAT
5' Flanking SequenceTCATGACCAAGCTGCTCCTTCCTGGCCTCGCCTCCACGTTGCCCCAGTTCCTGATACCCC T
3' Flanking SequenceATGACCTAGCTGCTCCTTCCTTGTCTCACCTCCGCGGTGGCCCAGTTCCTGGTACCCCTC A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201312N/A34.64RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2View
2Apple-M432-2013-physical-Malus-domestica12N/A29070012RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2View
3Apple-RosBREED-3.9K-201912N/A50.38RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2View
4Apple-Honeycrisp_Consensus-F112N/A50.38RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2View
Sequence
>RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2 ID=RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2; Name=RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2; organism=Malus x domestica; type=genetic_marker; length=75bp
CTCGCCTCCACGTTGCCCCAGTTCCTGATACCCCT[A/C]ATGACCTAGC
TGCTCCTTCCTTGTCTCACCTCCGC
Alignments
Feature NameTypeLocationAnalysis
MDC002496.290 contig MDC002496.290:2093..2093. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr12 chromosome Chr12:25241932..25241932- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation