GR:2:15-21, GR:2:15-21 (haplotype_block) Prunus cerasus

Haplotype Block Overview

Name	GR:2:15-21
Species	Prunus cerasus
Stock Haplotype	[view all 9]
Haplotype	[view all]

Publications


Year	Publication
2018	Cai L, Stegmeir T, Sebolt A, Zheng C, Bink MCAM, Iezzoni A. Identification of bloom date QTLs and haplotype analysis in tetraploid sour cherry (Prunus cerasus). Tree Genetics and Genomes. 2018; 14:22.
2013	Rosyara UR, Bink MCAM, van de Weg E, Zhang G, Wang D, Sebolt A, Dirlewanger E, Quero-Garcia J, Schuster M, Iezzoni AF. Fruit size QTL identification and the prediction of parental QTL genotypes and breeding values in multiple pedigreed populations of sweet cherry. Molecular breeding. 2013; 32(4):875-887.

Stock Haplotype

Name	Haplotype
Montmorency	d h i
Tamaris	b i r s
Ujfehertoi Furtos	a d j k
Rheinische Schattenmorelle	b d h i
25-02-29	a b c d
25-14-20	h i j k
M172	a e f g
Surefire	d i l m
Englaise_Timpurii	n o p q

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
GR:2:15-21	Sour Cherry-M172x25-F1	LG2	20.9	43

Projects


Project Name
RosBREED_Tart_Cherry_Haplotype_2019

Haplotypes

Marker	a	b	c	d	e	f	g	h	i	j	k	l	m	n	o	p	q	r	s
RosBREED_snp_sweet_cherry_Pp2_13127387	A	A	A	A	A	A	B	A	A	B	A	A	A	A	A	B	A	A	A
RosBREED_snp_sweet_cherry_Pp2_14255547	A	B	A	A	B	B	A	B	B	A	B	B	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_14725827	B	A	B	B	A	B	B	A	A	B	A	B	A	B	A	B	B	B	A
RosBREED_snp_sweet_cherry_Pp2_14926622	A	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp2_15084429	A	A	A	A	B	B	A	B	A	A	A	A	B	A	A	A	B	A	A
RosBREED_snp_sweet_cherry_Pp2_15127760	A	B	B	B	A	A	B	A	B	B	A	B	A	B	B	B	A	B	B
RosBREED_snp_sweet_cherry_Pp2_15129278	B	A	A	A	B	B	A	B	A	A	B	A	B	A	A	A	B	A	A
RosBREED_snp_sweet_cherry_Pp2_15162260	B	B	A	A	B	B	A	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_15172649	B	B	A	A	B	B	A	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_15337787	B	A	A	A	A	B	A	B	B	A	B	B	B	A	B	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_15372418	B	B	B	B	B	A	B	B	B	B	B	B	B	B	B	B	B	A	B
RosBREED_snp_sweet_cherry_Pp2_15492297	B	A	B	B	A	B	B	A	B	B	B	B	A	B	B	B	A	B	B
RosBREED_snp_sweet_cherry_Pp2_15598480	B	B	A	A	A	B	B	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_15658996	B	B	A	A	B	B	B	B	B	B	B	B	B	A	B	B	B	B	A
RosBREED_snp_sweet_cherry_Pp2_15747822	A	A	A	A	A	B	A	B	A	A	A	A	A	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_15778222	A	A	B	B	A	A	A	A	B	B	A	B	A	B	B	B	A	A	B
RosBREED_snp_sweet_cherry_Pp2_15873315	B	B	A	A	B	B	B	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_15873418	B	B	A	A	B	B	B	A	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_15894385	B	B	A	A	B	B	A	A	A	A	A	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_15894441	A	A	B	B	A	A	A	A	B	B	A	B	A	B	B	B	A	A	B
RosBREED_snp_sweet_cherry_Pp2_16118423	B	B	A	A	B	A	B	B	A	A	B	A	B	A	A	A	B	A	A
RosBREED_snp_sweet_cherry_Pp2_16142700	B	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A	A	B	A
RosBREED_snp_sweet_cherry_Pp2_16229065	B	B	A	A	B	B	B	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_16530061	B	B	B	A	B	B	B	B	B	B	B	B	B	A	B	B	B	B	A
RosBREED_snp_sweet_cherry_Pp2_16550340	B	A	B	B	A	A	B	A	B	B	B	B	A	B	B	B	B	A	B
RosBREED_snp_sweet_cherry_Pp2_16581454	B	B	A	A	B	B	A	B	A	A	A	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_16583654	B	B	A	A	B	B	A	B	A	A	A	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_16585549	A	A	B	B	A	A	B	A	B	B	B	B	A	B	B	B	A	A	B
RosBREED_snp_sweet_cherry_Pp2_16644104	A	B	A	A	B	B	B	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_16657611	A	A	B	B	A	A	B	A	B	B	B	B	A	B	B	B	A	A	B
RosBREED_snp_sweet_cherry_Pp2_16671049	A	A	B	B	A	A	A	A	B	B	A	B	A	B	B	B	A	A	B
RosBREED_snp_sweet_cherry_Pp2_16689292	B	B	B	A	B	B	B	B	B	B	B	B	B	A	B	B	B	B	A
RosBREED_snp_sweet_cherry_Pp2_16732373	A	A	A	B	A	A	A	A	A	A	A	A	A	B	A	A	A	A	B
RosBREED_snp_sweet_cherry_Pp2_16738223	B	B	B	B	B	B	B	B	B	A	B	A	B	B	B	A	B	B	B
RosBREED_snp_sweet_cherry_Pp2_16779535	B	B	B	A	B	B	B	B	B	B	B	B	B	A	B	B	B	B	A
RosBREED_snp_sweet_cherry_Pp2_16801115	B	B	A	A	B	B	B	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_16827404	A	A	B	B	A	A	A	A	B	B	A	B	A	B	B	B	A	A	B
RosBREED_snp_sweet_cherry_Pp2_16842231	B	B	A	A	B	B	B	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_16874016	A	A	B	B	A	A	A	A	B	B	A	B	A	B	B	B	A	A	B
RosBREED_snp_sweet_cherry_Pp2_16875339	A	B	B	B	B	A	A	B	B	B	A	B	B	B	B	B	A	A	B
RosBREED_snp_sweet_cherry_Pp2_16879478	B	A	A	A	A	B	B	A	A	A	B	A	A	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_16885395	B	B	A	A	B	B	B	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp2_16918304	B	B	A	A	B	B	B	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp7_11340593	B	B	B	B	B	B	A	B	B	A	B	B	B	B	A	A	B	B	B
RosBREED_snp_sweet_cherry_Pp7_11504432	A	B	B	B	B	B	B	B	B	A	A	B	B	B	B	B	B	B	B
RosBREED_snp_sweet_cherry_Pp7_11774569	B	B	B	B	B	A	B	B	B	B	A	B	B	B	B	B	B	A	B
RosBREED_snp_tart_cherry_a_Pp2_12806308	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	A	A
RosBREED_snp_tart_cherry_a_Pp2_15863936	B	B	A	A	B	B	B	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_tart_cherry_a_Pp2_16111179	B	B	A	A	B	B	B	B	A	A	B	A	B	A	A	A	B	B	A
RosBREED_snp_tart_cherry_a_Pp2_16926980	A	A	B	B	A	A	A	A	B	B	A	B	A	B	B	B	A	B	A
RosBREED_snp_tart_cherry_a_Pp7_11790341	A	B	A	A	B	B	A	B	A	A	A	A	B	A	A	A	B	B	A
RosBREED_snp_tart_cherry_f_Pp2_13629048	B	B	A	A	B	B	B	B	B	B	B	B	B	A	B	B	B	B	B
RosBREED_snp_tart_cherry_f_Pp2_16005866	A	A	B	B	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B
RosBREED_snp_tart_cherry_f_Pp2_16519837	A	A	A	A	A	A	A	A	B	B	A	B	A	A	B	B	A	A	A
RosBREED_snp_tart_cherry_f_Pp2_16840994	B	B	B	A	B	B	B	B	B	B	B	B	B	A	B	B	B	B	A

Alignments

Feature Name	Type	Location	Analysis
Pp02	chromosome	Pp02:15584545..20503490.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)

Annotated Terms

The following terms have been associated with this haplotype_block:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000192302	flower date 50%
MAIN:000201942	fruit size