GR:5:0-6, GR:5:0-6 (haplotype_block) Prunus cerasus

Haplotype Block Overview

Name	GR:5:0-6
Species	Prunus cerasus
Stock Haplotype	[view all 9]
Haplotype	[view all]

Publications


Year	Publication
2017	Hernández Mora JR, Micheletti D, Bink M, Van de Weg E, Cantín C, Nazzicari N, Caprera A, Dettori MT, Micali S, Banchi E, Campoy JA, Dirlewanger E, Lambert P, Pascal T, Troggio M, Bassi D, Rossini L, Verde I, Quilot-Turion B, Laurens F, Arús P, Aranzana MJ. Integrated QTL detection for key breeding traits in multiple peach progenies. BMC genomics. 2017 Jun 06; 18(1):404.

Stock Haplotype

Name	Haplotype
Montmorency	a c g h
Tamaris	c d q r
Ujfehertoi Furtos	b c g k
Rheinische Schattenmorelle	f j m n
25-02-29	a b c d
25-14-20	b c i j
M172	c e f g
Surefire	c g i l
Englaise_Timpurii	b f o p

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
GR:5:0-6	Sour Cherry-M172x25-F1	LG5	0.8	6.8

Projects


Project Name
RosBREED_Tart_Cherry_Haplotype_2019

Haplotypes

Marker	a	b	c	d	e	f	g	h	i	j	k	l	m	n	o	p	q	r
RosBREED_snp_sweet_cherry_Pp5_00689941	A	A	B	B	A	B	B	A	B	B	B	B	B	B	A	B	A	B
RosBREED_snp_sweet_cherry_Pp5_00710199	A	A	A	B	A	A	B	A	A	B	A	A	A	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_00857660	A	A	B	B	A	A	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_00934368	A	B	A	A	B	B	A	B	B	A	B	B	B	A	A	B	A	B
RosBREED_snp_sweet_cherry_Pp5_00949123	B	A	B	B	A	A	B	A	A	B	A	A	A	B	B	A	B	A
RosBREED_snp_sweet_cherry_Pp5_00975724	B	B	A	B	B	B	B	B	B	B	B	B	B	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_00987941	B	B	A	A	B	B	A	B	B	A	B	B	B	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_01005418	B	B	A	A	B	B	A	B	B	A	B	B	B	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_01121958	B	B	A	A	B	B	A	B	B	A	B	B	B	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_01221714	B	B	A	A	B	B	A	A	B	A	B	B	B	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_01451354	B	B	A	A	B	B	A	B	B	A	B	B	B	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_01607433	A	A	A	B	A	A	B	A	A	B	A	A	A	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_01645289	B	B	A	A	B	B	A	A	A	A	A	A	A	A	B	A	B	A
RosBREED_snp_sweet_cherry_Pp5_02236592	B	B	A	A	B	B	A	B	B	A	B	B	B	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_02722408	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_03142214	A	A	B	B	A	A	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_03248658	A	A	B	A	A	A	A	A	A	A	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_03299986	B	A	A	B	A	B	B	B	B	B	B	B	B	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_03464400	A	A	B	B	A	A	B	A	B	B	A	A	B	B	A	A	B	B
RosBREED_snp_sweet_cherry_Pp5_03492263	B	B	A	A	B	B	A	B	A	A	B	B	A	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_03557553	B	B	A	B	B	B	B	B	B	B	B	B	B	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_03631504	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_03644242	A	A	B	B	A	A	B	B	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_03695755	A	B	B	B	B	B	B	B	B	B	A	B	B	B	A	A	B	A
RosBREED_snp_sweet_cherry_Pp5_03731884	A	A	B	B	A	A	B	B	B	B	A	B	B	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_03767786	B	A	A	A	A	B	A	A	A	A	A	A	A	A	B	A	A	B
RosBREED_snp_sweet_cherry_Pp5_03864042	A	A	B	B	A	A	B	A	A	B	A	A	B	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_03917338	A	A	B	B	A	A	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_04005643	A	A	B	B	A	A	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_04028824	A	A	B	B	A	A	B	A	B	B	A	B	B	B	A	A	B	A
RosBREED_snp_sweet_cherry_Pp5_04345439	A	A	B	B	A	B	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_04357749	B	B	B	B	B	A	B	B	B	B	A	B	B	B	B	A	B	B
RosBREED_snp_sweet_cherry_Pp5_04413731	B	B	A	A	B	B	A	B	A	A	A	B	A	A	B	A	A	B
RosBREED_snp_sweet_cherry_Pp5_04486238	B	A	A	A	A	B	A	B	B	A	B	B	B	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp5_04755463	A	B	B	B	B	A	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_04897952	B	B	A	A	B	B	A	B	A	A	B	B	A	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_04994245	A	A	B	B	A	A	B	A	A	B	A	A	A	B	A	B	A	A
RosBREED_snp_sweet_cherry_Pp5_05143453	B	B	A	A	B	B	A	B	B	A	B	B	B	A	B	A	B	B
RosBREED_snp_sweet_cherry_Pp5_05242696	A	A	B	A	A	A	A	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_05409519	B	A	A	A	B	B	A	B	A	A	B	A	A	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp5_05429352	A	B	B	B	A	A	B	A	B	B	A	B	B	B	B	B	B	B
RosBREED_snp_tart_cherry_a_Pp5_00990328	A	A	B	B	A	A	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_tart_cherry_a_Pp5_01463960	B	B	A	A	B	B	A	B	B	A	B	B	B	A	B	B	B	B
RosBREED_snp_tart_cherry_a_Pp5_05354555	B	B	A	A	B	B	A	B	B	A	B	B	B	A	B	A	B	B
RosBREED_snp_tart_cherry_f_Pp5_00935896	A	A	B	B	A	A	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_tart_cherry_f_Pp5_01031051	A	A	B	B	A	A	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_tart_cherry_f_Pp5_01871057	A	A	B	B	A	A	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_tart_cherry_f_Pp5_02404347	B	B	B	A	B	B	A	B	B	A	B	B	B	B	B	B	B	B
RosBREED_snp_tart_cherry_f_Pp5_03394531	A	A	B	B	A	A	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_tart_cherry_f_Pp5_03513593	B	B	A	B	B	B	B	B	B	B	B	B	B	A	B	B	B	B
RosBREED_snp_tart_cherry_f_Pp5_03909319	B	B	A	B	B	B	B	B	B	B	B	B	B	A	B	B	B	B
RosBREED_snp_tart_cherry_f_Pp5_04181905	A	A	B	B	A	A	B	A	A	B	A	A	A	B	A	A	A	A
RosBREED_snp_tart_cherry_f_Pp5_04415391	A	A	A	B	A	A	B	A	A	B	A	A	A	A	A	A	A	A
RosBREED_snp_tart_cherry_f_Pp5_05238673	A	A	B	A	A	A	A	A	A	B	A	A	A	B	A	A	A	A

Alignments

Feature Name	Type	Location	Analysis
Pp05	chromosome	Pp05:689943..5430402.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)

Annotated Terms

The following terms have been associated with this haplotype_block:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000193412	titratable acidity