Apple-M432-2013-physical-Malus-domestica

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_GA_23850226_Lg14_MDP0000258032_MAF20_MDP0000258032_exon1RosBREEDSNP_SNP_GA_23850226_Lg14_MDP0000258032_MAF20_MDP0000258032_exon1marker_locus23850226 bp
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_CT_23851939_Lg14_MDP0000258032_MAF10_MDP0000258032_exon8RosBREEDSNP_SNP_CT_23851939_Lg14_MDP0000258032_MAF10_MDP0000258032_exon8marker_locus23851939 bp
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_AG_23852990_Lg14_MDP0000258032_MAF30_MDP0000258032_exon12RosBREEDSNP_SNP_AG_23852990_Lg14_MDP0000258032_MAF30_MDP0000258032_exon12marker_locus23852990 bp
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_TC_26899946_Lg14_02079_MAF40_1688445_exon5RosBREEDSNP_SNP_TC_26899946_Lg14_02079_MAF40_1688445_exon5marker_locus26899946 bp
Apple-M432-2013-physical-Malus-domestica.14GDsnp01473GDsnp01473marker_locus27132383 bp
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_GA_27487573_Lg14_01213_MAF30_1647799_exon1RosBREEDSNP_SNP_GA_27487573_Lg14_01213_MAF30_1647799_exon1marker_locus27487573 bp
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_CT_27490010_Lg14_01213_MAF40_508966_exon2RosBREEDSNP_SNP_CT_27490010_Lg14_01213_MAF40_508966_exon2marker_locus27490010 bp
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_AG_29023015_Lg14_326186__326186_exon1RosBREEDSNP_SNP_AG_29023015_Lg14_326186__326186_exon1marker_locus29023015 bp
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1RosBREEDSNP_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1marker_locus29441767 bp
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_CT_29454025_Lg14_01811_MAF30_166998_exon1RosBREEDSNP_SNP_CT_29454025_Lg14_01811_MAF30_166998_exon1marker_locus29454025 bp
Apple-M432-2013-physical-Malus-domestica.14GDsnp01811GDsnp01811marker_locus29490500 bp
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_GT_33137250_Lg14_00023_MAF50_776045_exon1RosBREEDSNP_SNP_GT_33137250_Lg14_00023_MAF50_776045_exon1marker_locus33137250 bp
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_TG_33270439_Lg14_01548_MAF20_95229_exon1RosBREEDSNP_SNP_TG_33270439_Lg14_01548_MAF20_95229_exon1marker_locus33270439 bp
Apple-M432-2013-physical-Malus-domestica.14RosBREEDSNP_SNP_CT_33432011_Lg14_218702_MAF30_218702_exon1RosBREEDSNP_SNP_CT_33432011_Lg14_218702_MAF30_218702_exon1marker_locus33432011 bp
Apple-M432-2013-physical-Malus-domestica.15Pear_Bartlett_RosBREEDSNP_SNP_CT_626_5084186Pear_Bartlett_RosBREEDSNP_SNP_CT_626_5084186marker_locus626 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_579463_Lg15_00349_MAF30_1655727_exon5RosBREEDSNP_SNP_AG_579463_Lg15_00349_MAF30_1655727_exon5marker_locus579463 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AC_991418_Lg15_00694_MAF40_470365_exon1RosBREEDSNP_SNP_AC_991418_Lg15_00694_MAF40_470365_exon1marker_locus991418 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_1505198_Lg15_00717_MAF50_MDP0000244686_exon3RosBREEDSNP_SNP_AG_1505198_Lg15_00717_MAF50_MDP0000244686_exon3marker_locus1505198 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_CT_2485699_Lg15_02844_MAF50_MDP0000321199_exon4RosBREEDSNP_SNP_CT_2485699_Lg15_02844_MAF50_MDP0000321199_exon4marker_locus2485699 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_2570272_Lg15_00842_MAF20_MDP0000290482_exon1RosBREEDSNP_SNP_AG_2570272_Lg15_00842_MAF20_MDP0000290482_exon1marker_locus2570272 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_3491412_Lg15_00134_MAF50_112010_exon1RosBREEDSNP_SNP_GA_3491412_Lg15_00134_MAF50_112010_exon1marker_locus3491412 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_3603469_Lg15_01047_MAF10_MDP0000283970_exon1RosBREEDSNP_SNP_AG_3603469_Lg15_01047_MAF10_MDP0000283970_exon1marker_locus3603469 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_3915965_Lg15_01827_MAF40_MDP0000160060_exon1RosBREEDSNP_SNP_GA_3915965_Lg15_01827_MAF40_MDP0000160060_exon1marker_locus3915965 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_3921480_Lg15_01827_MAF40_MDP0000191367_exon1RosBREEDSNP_SNP_AG_3921480_Lg15_01827_MAF40_MDP0000191367_exon1marker_locus3921480 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AC_4024691_Lg15_snpEB134400_MAF30_185854_exon1RosBREEDSNP_SNP_AC_4024691_Lg15_snpEB134400_MAF30_185854_exon1marker_locus4024691 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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