Apple-M432-2013-physical-Malus-domestica

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AC_5073776_Lg15_160246_MAF10_160246_exon7RosBREEDSNP_SNP_AC_5073776_Lg15_160246_MAF10_160246_exon7marker_locus5073776 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_6552741_Lg15_00076_MAF20_1656117_exon1RosBREEDSNP_SNP_GA_6552741_Lg15_00076_MAF20_1656117_exon1marker_locus6552741 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1RosBREEDSNP_SNP_GA_6942588_Lg15_snpDT001928_MAF20_1676443_exon1marker_locus6942588 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_7254175_Lg15_00274_MAF40_1678650_exon1RosBREEDSNP_SNP_AG_7254175_Lg15_00274_MAF40_1678650_exon1marker_locus7254175 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_8229724_Lg15_00796_MAF50_614785_exon1RosBREEDSNP_SNP_GA_8229724_Lg15_00796_MAF50_614785_exon1marker_locus8229724 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_8352805_Lg15_226490_MAF40_226490_exon1RosBREEDSNP_SNP_GA_8352805_Lg15_226490_MAF40_226490_exon1marker_locus8352805 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TC_8963216_Lg15_00894_MAF30_1684474_exon10RosBREEDSNP_SNP_TC_8963216_Lg15_00894_MAF30_1684474_exon10marker_locus8963216 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TC_10411650_Lg15_00543_MAF50_MDP0000144056_exon1RosBREEDSNP_SNP_TC_10411650_Lg15_00543_MAF50_MDP0000144056_exon1marker_locus10411650 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_11024902_Lg15_02869_MAF10_MDP0000792563_exon1RosBREEDSNP_SNP_GA_11024902_Lg15_02869_MAF10_MDP0000792563_exon1marker_locus11024902 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_13677933_Lg15_01587_MAF50_1626292_exon1RosBREEDSNP_SNP_GA_13677933_Lg15_01587_MAF50_1626292_exon1marker_locus13677933 bp
Apple-M432-2013-physical-Malus-domestica.15GDsnp00816GDsnp00816marker_locus14255796 bp
Apple-M432-2013-physical-Malus-domestica.15GDsnp00429GDsnp00429marker_locus14693846 bp
Apple-M432-2013-physical-Malus-domestica.15GDsnp02003GDsnp02003marker_locus15031068 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_15772962_Lg15_00273_MAF20_MDP0000297167_exon8RosBREEDSNP_SNP_AG_15772962_Lg15_00273_MAF20_MDP0000297167_exon8marker_locus15772962 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_15835969_Lg15_00273_MAF10_MDP0000163438_exon3RosBREEDSNP_SNP_AG_15835969_Lg15_00273_MAF10_MDP0000163438_exon3marker_locus15835969 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_16444112_Lg15_01229_MAF10_121480_exon5RosBREEDSNP_SNP_AG_16444112_Lg15_01229_MAF10_121480_exon5marker_locus16444112 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TC_18343847_Lg15_RosCOS1184_MAF40_MDP0000157185_exon1RosBREEDSNP_SNP_TC_18343847_Lg15_RosCOS1184_MAF40_MDP0000157185_exon1marker_locus18343847 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TC_19023204_Lg15_01838_MAF30_MDP0000526640_exon2RosBREEDSNP_SNP_TC_19023204_Lg15_01838_MAF30_MDP0000526640_exon2marker_locus19023204 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_21316906_Lg15_MDP0000677258__MDP0000677258_exon4RosBREEDSNP_SNP_AG_21316906_Lg15_MDP0000677258__MDP0000677258_exon4marker_locus21316906 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_CT_21317002_Lg15_MDP0000677258__MDP0000677258_exon4SNP_CT_21317002_Lg15_MDP0000677258__MDP0000677258_exon4marker_locus21317002 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_21320047_Lg15_MDP0000677258_MAF50_MDP0000677258_exon1RosBREEDSNP_SNP_AG_21320047_Lg15_MDP0000677258_MAF50_MDP0000677258_exon1marker_locus21320047 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_CT_21459616_Lg15_02313_MAF10_MDP0000217513_exon2RosBREEDSNP_SNP_CT_21459616_Lg15_02313_MAF10_MDP0000217513_exon2marker_locus21459616 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_CT_22112531_Lg15_01813_MAF50_MDP0000313840_exon1RosBREEDSNP_SNP_CT_22112531_Lg15_01813_MAF50_MDP0000313840_exon1marker_locus22112531 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_24689342_Lg15_02859_MAF40_MDP0000150372_exon1RosBREEDSNP_SNP_GA_24689342_Lg15_02859_MAF40_MDP0000150372_exon1marker_locus24689342 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_CT_25209921_Lg15_RosCOS588_MAF30_MDP0000689709_exon1RosBREEDSNP_SNP_CT_25209921_Lg15_RosCOS588_MAF30_MDP0000689709_exon1marker_locus25209921 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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