Apple-M432-2013-physical-Malus-domestica

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AC_27071636_Lg15_02084_MAF30_187884_exon1RosBREEDSNP_SNP_AC_27071636_Lg15_02084_MAF30_187884_exon1marker_locus27071636 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_27126107_Lg15_182111_MAF40_182111_exon1RosBREEDSNP_SNP_AG_27126107_Lg15_182111_MAF40_182111_exon1marker_locus27126107 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TC_27876981_Lg15_00208_MAF20_1638877_exon1SNP_TC_27876981_Lg15_00208_MAF20_1638877_exon1marker_locus27876981 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TC_28678775_Lg15_02592_MAF20_MDP0000161195_exon1SNP_TC_28678775_Lg15_02592_MAF20_MDP0000161195_exon1marker_locus28678775 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GT_30914007_Lg15_RosCOS444_MAF30_MDP0000611785_exon1RosBREEDSNP_SNP_GT_30914007_Lg15_RosCOS444_MAF30_MDP0000611785_exon1marker_locus30914007 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GT_30978430_Lg15_RosCOS444_MAF10_MDP0000263390_exon6RosBREEDSNP_SNP_GT_30978430_Lg15_RosCOS444_MAF10_MDP0000263390_exon6marker_locus30978430 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_33700351_Lg15_01897_MAF40_MDP0000170511_exon4RosBREEDSNP_SNP_GA_33700351_Lg15_01897_MAF40_MDP0000170511_exon4marker_locus33700351 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_42727752_Lg15_01133_MAF40_1636710_exon4RosBREEDSNP_SNP_GA_42727752_Lg15_01133_MAF40_1636710_exon4marker_locus42727752 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_CT_43012110_Lg15_RosCOS1842_MAF40_9800_exon1RosBREEDSNP_SNP_CT_43012110_Lg15_RosCOS1842_MAF40_9800_exon1marker_locus43012110 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_44311702_Lg15_01687_MAF30_1685405_exon1RosBREEDSNP_SNP_GA_44311702_Lg15_01687_MAF30_1685405_exon1marker_locus44311702 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TC_45022535_Lg15_ACS_MAF50_1618441_exon1RosBREEDSNP_SNP_TC_45022535_Lg15_ACS_MAF50_1618441_exon1marker_locus45022535 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_45033031_Lg15_ACS_MAF10_MDP0000309577_exon2RosBREEDSNP_SNP_GA_45033031_Lg15_ACS_MAF10_MDP0000309577_exon2marker_locus45033031 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_45058256_Lg15_ACS_MAF50_MDP0000318443_exon5RosBREEDSNP_SNP_GA_45058256_Lg15_ACS_MAF50_MDP0000318443_exon5marker_locus45058256 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TG_45884863_Lg15_RosCOS1627_MAF30_362819_exon3RosBREEDSNP_SNP_TG_45884863_Lg15_RosCOS1627_MAF30_362819_exon3marker_locus45884863 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TC_47073089_Lg15_167070_MAF20_167070_exon1RosBREEDSNP_SNP_TC_47073089_Lg15_167070_MAF20_167070_exon1marker_locus47073089 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TC_47073227_Lg15_167070__167070_exon1RosBREEDSNP_SNP_TC_47073227_Lg15_167070__167070_exon1marker_locus47073227 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TG_47073324_Lg15_167070_MAF40_167070_exon1RosBREEDSNP_SNP_TG_47073324_Lg15_167070_MAF40_167070_exon1marker_locus47073324 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TC_49247422_Lg15_01707_MAF30_509521_exon1RosBREEDSNP_SNP_TC_49247422_Lg15_01707_MAF30_509521_exon1marker_locus49247422 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_49267247_Lg15_01707_MAF50_MDP0000158447_exon6RosBREEDSNP_SNP_AG_49267247_Lg15_01707_MAF50_MDP0000158447_exon6marker_locus49267247 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1marker_locus49286326 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TG_50064602_Lg15_01778_MAF40_MDP0000266480_exon3RosBREEDSNP_SNP_TG_50064602_Lg15_01778_MAF40_MDP0000266480_exon3marker_locus50064602 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_51301407_Lg15_00236_MAF30_1651413_exon2RosBREEDSNP_SNP_GA_51301407_Lg15_00236_MAF30_1651413_exon2marker_locus51301407 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_AG_54518780_Lg15_01774_MAF30_1645728_exon1RosBREEDSNP_SNP_AG_54518780_Lg15_01774_MAF30_1645728_exon1marker_locus54518780 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_GA_55332967_Lg15_01392_MAF20_MDP0000135349_exon8SNP_GA_55332967_Lg15_01392_MAF20_MDP0000135349_exon8marker_locus55332967 bp
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_CT_55338420_Lg15_01392_MAF30_732277_exon1SNP_CT_55338420_Lg15_01392_MAF30_732277_exon1marker_locus55338420 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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