Apple-M432-2013-physical-Malus-domestica

Map Overview

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.15RosBREEDSNP_SNP_TC_55610693_Lg15_327586_MAF20_327586_exon1RosBREEDSNP_SNP_TC_55610693_Lg15_327586_MAF20_327586_exon1marker_locus55610693 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_GA_1181616_Lg16_01588_MAF20_1632539_exon4RosBREEDSNP_SNP_GA_1181616_Lg16_01588_MAF20_1632539_exon4marker_locus1181616 bp
Apple-M432-2013-physical-Malus-domestica.16GDsnp01600GDsnp01600marker_locus1344272 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_AC_1548240_Lg16_LAR1_MAF30_287180_exon1RosBREEDSNP_SNP_AC_1548240_Lg16_LAR1_MAF30_287180_exon1marker_locus1548240 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_CT_1898890_Lg16_00047_MAF10_1669458_exon1RosBREEDSNP_SNP_CT_1898890_Lg16_00047_MAF10_1669458_exon1marker_locus1898890 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_GA_2305855_Lg16_00719_MAF30_767049_exon1RosBREEDSNP_SNP_GA_2305855_Lg16_00719_MAF30_767049_exon1marker_locus2305855 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_GA_2319323_Lg16_00719_MAF20_MDP0000234754_exon1RosBREEDSNP_SNP_GA_2319323_Lg16_00719_MAF20_MDP0000234754_exon1marker_locus2319323 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2RosBREEDSNP_SNP_CT_3066832_Lg16_01116_MAF50_MDP0000316569_exon2marker_locus3066832 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_TC_3078798_Lg16_01116_MAF40_1625909_exon1RosBREEDSNP_SNP_TC_3078798_Lg16_01116_MAF40_1625909_exon1marker_locus3078798 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_CA_3081478_Lg16_01116_MAF20_MDP0000151597_exon1RosBREEDSNP_SNP_CA_3081478_Lg16_01116_MAF20_MDP0000151597_exon1marker_locus3081478 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_TC_3437104_Lg16_00353_MAF10_495480_exon1RosBREEDSNP_SNP_TC_3437104_Lg16_00353_MAF10_495480_exon1marker_locus3437104 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_GA_3756948_Lg16_01186_MAF30_271874_exon1RosBREEDSNP_SNP_GA_3756948_Lg16_01186_MAF30_271874_exon1marker_locus3756948 bp
Apple-M432-2013-physical-Malus-domestica.16GDsnp00555GDsnp00555marker_locus3778150 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_TG_3937877_Lg16_01179_MAF20_1634068_exon4RosBREEDSNP_SNP_TG_3937877_Lg16_01179_MAF20_1634068_exon4marker_locus3937877 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_GA_4020543_Lg16_01179_MAF30_1659407_exon5RosBREEDSNP_SNP_GA_4020543_Lg16_01179_MAF30_1659407_exon5marker_locus4020543 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_TC_4428268_Lg16_182011_MAF10_182011_exon1RosBREEDSNP_SNP_TC_4428268_Lg16_182011_MAF10_182011_exon1marker_locus4428268 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_CA_4428275_Lg16_182011_MAF10_182011_exon1RosBREEDSNP_SNP_CA_4428275_Lg16_182011_MAF10_182011_exon1marker_locus4428275 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_AG_4428309_Lg16_182011__182011_exon1RosBREEDSNP_SNP_AG_4428309_Lg16_182011__182011_exon1marker_locus4428309 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_TC_5365087_Lg16_00030_MAF40_1630198_exon1RosBREEDSNP_SNP_TC_5365087_Lg16_00030_MAF40_1630198_exon1marker_locus5365087 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_TC_6025455_Lg16_01003_MAF40_MDP0000121918_exon1RosBREEDSNP_SNP_TC_6025455_Lg16_01003_MAF40_MDP0000121918_exon1marker_locus6025455 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_GT_6031293_Lg16_01003_MAF30_MDP0000224706_exon2RosBREEDSNP_SNP_GT_6031293_Lg16_01003_MAF30_MDP0000224706_exon2marker_locus6031293 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_CT_6047197_Lg16_01003_MAF50_153552_exon2RosBREEDSNP_SNP_CT_6047197_Lg16_01003_MAF50_153552_exon2marker_locus6047197 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_TC_6697023_Lg16_01173_MAF50_728139_exon1RosBREEDSNP_SNP_TC_6697023_Lg16_01173_MAF50_728139_exon1marker_locus6697023 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_CT_6824928_Lg16_02194_MAF20_1633886_exon1RosBREEDSNP_SNP_CT_6824928_Lg16_02194_MAF20_1633886_exon1marker_locus6824928 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_GA_8337588_Lg16_RosCOS1090_MAF20_1638651_exon2RosBREEDSNP_SNP_GA_8337588_Lg16_RosCOS1090_MAF20_1638651_exon2marker_locus8337588 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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