Apple-M432-2013-physical-Malus-domestica

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_GA_8440650_Lg16_MDP0000735747_MAF50_MDP0000735747_exon1RosBREEDSNP_SNP_GA_8440650_Lg16_MDP0000735747_MAF50_MDP0000735747_exon1marker_locus8440650 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_GT_14109548_Lg16_01624_MAF50_MDP0000280459_exon1RosBREEDSNP_SNP_GT_14109548_Lg16_01624_MAF50_MDP0000280459_exon1marker_locus14109548 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_AG_14123185_Lg16_01624_MAF40_MDP0000689963_exon1RosBREEDSNP_SNP_AG_14123185_Lg16_01624_MAF40_MDP0000689963_exon1marker_locus14123185 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_GT_15408956_Lg16_02207_MAF20_1681603_exon1RosBREEDSNP_SNP_GT_15408956_Lg16_02207_MAF20_1681603_exon1marker_locus15408956 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREED_RosBREEDSNP_SNP_GA_17763049_Lg16RosBREED_RosBREEDSNP_SNP_GA_17763049_Lg16marker_locus17763049 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_AG_20455509_Lg16_01237_MAF50_484960_exon3RosBREEDSNP_SNP_AG_20455509_Lg16_01237_MAF50_484960_exon3marker_locus20455509 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_AG_20502979_Lg16_01237_MAF40_MDP0000185320_exon4RosBREEDSNP_SNP_AG_20502979_Lg16_01237_MAF40_MDP0000185320_exon4marker_locus20502979 bp
Apple-M432-2013-physical-Malus-domestica.16RosBREEDSNP_SNP_CA_21409591_Lg16_MDP0000185253__MDP0000185253_exon12RosBREEDSNP_SNP_CA_21409591_Lg16_MDP0000185253__MDP0000185253_exon12marker_locus21409591 bp
Apple-M432-2013-physical-Malus-domestica.17Pear_Bartlett_RosBREEDSNP_SNP_CA_274_5095631Pear_Bartlett_RosBREEDSNP_SNP_CA_274_5095631marker_locus274 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TC_350742_Lg17_01974_MAF10_225081_exon1RosBREEDSNP_SNP_TC_350742_Lg17_01974_MAF10_225081_exon1marker_locus350742 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GT_360930_Lg17_01974_MAF50_243320_exon1RosBREEDSNP_SNP_GT_360930_Lg17_01974_MAF50_243320_exon1marker_locus360930 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_406763_Lg17_MDP0000263576_MAF10_MDP0000263576_exon2RosBREEDSNP_SNP_CT_406763_Lg17_MDP0000263576_MAF10_MDP0000263576_exon2marker_locus406763 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TC_807178_Lg17_RosCOS659_MAF30_325903_exon1RosBREEDSNP_SNP_TC_807178_Lg17_RosCOS659_MAF30_325903_exon1marker_locus807178 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GA_1159401_Lg17_01241_MAF30_362748_exon1RosBREEDSNP_SNP_GA_1159401_Lg17_01241_MAF30_362748_exon1marker_locus1159401 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TG_1169632_Lg17_01241_MAF50_1638191_exon2RosBREEDSNP_SNP_TG_1169632_Lg17_01241_MAF50_1638191_exon2marker_locus1169632 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TG_2059314_Lg17_00290_MAF40_MDP0000848218_exon25RosBREEDSNP_SNP_TG_2059314_Lg17_00290_MAF40_MDP0000848218_exon25marker_locus2059314 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GA_2378562_Lg17_MDP0000193812_MAF30_MDP0000193812_exon4RosBREEDSNP_SNP_GA_2378562_Lg17_MDP0000193812_MAF30_MDP0000193812_exon4marker_locus2378562 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_2671029_Lg17_00210_MAF50_MDP0000437795_exon1RosBREEDSNP_SNP_CT_2671029_Lg17_00210_MAF50_MDP0000437795_exon1marker_locus2671029 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TC_2691490_Lg17_00508_MAF10_345541_exon1RosBREEDSNP_SNP_TC_2691490_Lg17_00508_MAF10_345541_exon1marker_locus2691490 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_AG_2697343_Lg17_00508_MAF50_MDP0000156421_exon1RosBREEDSNP_SNP_AG_2697343_Lg17_00508_MAF50_MDP0000156421_exon1marker_locus2697343 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TC_3138174_Lg17_01584_MAF40_1634816_exon4RosBREEDSNP_SNP_TC_3138174_Lg17_01584_MAF40_1634816_exon4marker_locus3138174 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_3878703_Lg17_MDP0000179859_MAF20_MDP0000179859_exon4RosBREEDSNP_SNP_CT_3878703_Lg17_MDP0000179859_MAF20_MDP0000179859_exon4marker_locus3878703 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TC_4119478_Lg17_RosCOS742_MAF30_1672401_exon3RosBREEDSNP_SNP_TC_4119478_Lg17_RosCOS742_MAF30_1672401_exon3marker_locus4119478 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_4915335_Lg17_02703_MAF40_MDP0000307134_exon6RosBREEDSNP_SNP_CT_4915335_Lg17_02703_MAF40_MDP0000307134_exon6marker_locus4915335 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CA_5680770_Lg17_00606_MAF50_506483_exon3RosBREEDSNP_SNP_CA_5680770_Lg17_00606_MAF50_506483_exon3marker_locus5680770 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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