Apple-M432-2013-physical-Malus-domestica

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GA_5683344_Lg17_00606_MAF10_MDP0000486718_exon1RosBREEDSNP_SNP_GA_5683344_Lg17_00606_MAF10_MDP0000486718_exon1marker_locus5683344 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GA_5701622_Lg17_00606_MAF50_MDP0000281828_exon1RosBREEDSNP_SNP_GA_5701622_Lg17_00606_MAF50_MDP0000281828_exon1marker_locus5701622 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GA_5713144_Lg17_00606_MAF30_1631410_exon1RosBREEDSNP_SNP_GA_5713144_Lg17_00606_MAF30_1631410_exon1marker_locus5713144 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_5721533_Lg17_00606_MAF30_10746_exon1RosBREEDSNP_SNP_CT_5721533_Lg17_00606_MAF30_10746_exon1marker_locus5721533 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TC_5967697_Lg17_00515_MAF50_MDP0000321569_exon4RosBREEDSNP_SNP_TC_5967697_Lg17_00515_MAF50_MDP0000321569_exon4marker_locus5967697 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TC_6905364_Lg17_01927_MAF30_MDP0000301145_exon1RosBREEDSNP_SNP_TC_6905364_Lg17_01927_MAF30_MDP0000301145_exon1marker_locus6905364 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREED_RosBREEDSNP_SNP_TC_7202016_Lg17RosBREED_RosBREEDSNP_SNP_TC_7202016_Lg17marker_locus7202016 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_AG_7389919_Lg17_02512_MAF40_506697_exon1RosBREEDSNP_SNP_AG_7389919_Lg17_02512_MAF40_506697_exon1marker_locus7389919 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_8577910_Lg17_00039_MAF20_MDP0000409121_exon1RosBREEDSNP_SNP_CT_8577910_Lg17_00039_MAF20_MDP0000409121_exon1marker_locus8577910 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TG_10460202_Lg17_01044_MAF50_MDP0000177125_exon1RosBREEDSNP_SNP_TG_10460202_Lg17_01044_MAF50_MDP0000177125_exon1marker_locus10460202 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GA_10708625_Lg17_146888_MAF30_146888_exon1RosBREEDSNP_SNP_GA_10708625_Lg17_146888_MAF30_146888_exon1marker_locus10708625 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CA_10915501_Lg17_00918_MAF40_1681837_exon11RosBREEDSNP_SNP_CA_10915501_Lg17_00918_MAF40_1681837_exon11marker_locus10915501 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_AG_10921610_Lg17_00918_MAF50_MDP0000461230_exon1RosBREEDSNP_SNP_AG_10921610_Lg17_00918_MAF50_MDP0000461230_exon1marker_locus10921610 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_AG_11746682_Lg17_MDP0000319957_MAF50_MDP0000319957_exon3RosBREEDSNP_SNP_AG_11746682_Lg17_MDP0000319957_MAF50_MDP0000319957_exon3marker_locus11746682 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CA_12026383_Lg17_00682_MAF20_357347_exon1RosBREEDSNP_SNP_CA_12026383_Lg17_00682_MAF20_357347_exon1marker_locus12026383 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_12072463_Lg17_00682_MAF50_MDP0000266161_exon6RosBREEDSNP_SNP_CT_12072463_Lg17_00682_MAF50_MDP0000266161_exon6marker_locus12072463 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TG_12081836_Lg17_00682_MAF50_492894_exon4RosBREEDSNP_SNP_TG_12081836_Lg17_00682_MAF50_492894_exon4marker_locus12081836 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TG_12623183_Lg17_01904_MAF20_MDP0000287687_exon1SNP_TG_12623183_Lg17_01904_MAF20_MDP0000287687_exon1marker_locus12623183 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_14006731_Lg17_02572_MAF20_MDP0000225528_exon1RosBREEDSNP_SNP_CT_14006731_Lg17_02572_MAF20_MDP0000225528_exon1marker_locus14006731 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GA_16518610_Lg17_01438_MAF10_422235_exon1RosBREEDSNP_SNP_GA_16518610_Lg17_01438_MAF10_422235_exon1marker_locus16518610 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GA_18732709_Lg17_00235_MAF20_1660220_exon3RosBREEDSNP_SNP_GA_18732709_Lg17_00235_MAF20_1660220_exon3marker_locus18732709 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GT_20005208_Lg17_01298_MAF20_1629877_exon1RosBREEDSNP_SNP_GT_20005208_Lg17_01298_MAF20_1629877_exon1marker_locus20005208 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TC_21060256_Lg17_01525_MAF30_1626827_exon11RosBREEDSNP_SNP_TC_21060256_Lg17_01525_MAF30_1626827_exon11marker_locus21060256 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TC_22732031_Lg17_00798_MAF50_MDP0000307493_exon5RosBREEDSNP_SNP_TC_22732031_Lg17_00798_MAF50_MDP0000307493_exon5marker_locus22732031 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1RosBREEDSNP_SNP_CT_24804248_Lg17_00341_MAF40_1654737_exon1marker_locus24804248 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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