Apple-M432-2013-physical-Malus-domestica

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GA_24825508_Lg17_00341_MAF50_MDP0000296152_exon3RosBREEDSNP_SNP_GA_24825508_Lg17_00341_MAF50_MDP0000296152_exon3marker_locus24825508 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_25284565_Lg17_MDP0000194307_MAF20_MDP0000194307_exon13RosBREEDSNP_SNP_CT_25284565_Lg17_MDP0000194307_MAF20_MDP0000194307_exon13marker_locus25284565 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_GA_25289304_Lg17_32736_MAF20_32736_exon1RosBREEDSNP_SNP_GA_25289304_Lg17_32736_MAF20_32736_exon1marker_locus25289304 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_25466366_Lg17_01467_MAF30_651806_exon1RosBREEDSNP_SNP_CT_25466366_Lg17_01467_MAF30_651806_exon1marker_locus25466366 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_TG_25497259_Lg17_01467_MAF40_204957_exon1RosBREEDSNP_SNP_TG_25497259_Lg17_01467_MAF40_204957_exon1marker_locus25497259 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_25499641_Lg17_01467_MAF30_MDP0000281526_exon1RosBREEDSNP_SNP_CT_25499641_Lg17_01467_MAF30_MDP0000281526_exon1marker_locus25499641 bp
Apple-M432-2013-physical-Malus-domestica.17RosBREEDSNP_SNP_CT_26169975_Lg17_95201_MAF40_95201_exon1RosBREEDSNP_SNP_CT_26169975_Lg17_95201_MAF40_95201_exon1marker_locus26169975 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AC_115951_Lg2_328024_MAF50_328024_exon4RosBREEDSNP_SNP_AC_115951_Lg2_328024_MAF50_328024_exon4marker_locus115951 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2RosBREEDSNP_SNP_TG_1555360_Lg2_snpCO903605_MAF20_1677573_exon2marker_locus1555360 bp
Apple-M432-2013-physical-Malus-domestica.2GDsnp01735GDsnp01735marker_locus1905345 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AG_1939660_Lg2_AAT1_MAF40_MDP0000145727_exon4RosBREEDSNP_SNP_AG_1939660_Lg2_AAT1_MAF40_MDP0000145727_exon4marker_locus1939660 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CT_2466886_Lg2_00959_MAF20_MDP0000210239_exon5RosBREEDSNP_SNP_CT_2466886_Lg2_00959_MAF20_MDP0000210239_exon5marker_locus2466886 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_TG_2487461_Lg2_00959_MAF20_35333_exon1RosBREEDSNP_SNP_TG_2487461_Lg2_00959_MAF20_35333_exon1marker_locus2487461 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CA_2951030_Lg2_RosCOS2955_MAF10_940098_exon1RosBREEDSNP_SNP_CA_2951030_Lg2_RosCOS2955_MAF10_940098_exon1marker_locus2951030 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AG_3257068_Lg2_RosCOS1998_MAF20_110688_exon1RosBREEDSNP_SNP_AG_3257068_Lg2_RosCOS1998_MAF20_110688_exon1marker_locus3257068 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2RosBREEDSNP_SNP_AG_3425722_Lg2_01641_MAF20_1660502_exon2marker_locus3425722 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AC_3435372_Lg2_01641_MAF30_1637004_exon3RosBREEDSNP_SNP_AC_3435372_Lg2_01641_MAF30_1637004_exon3marker_locus3435372 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_GT_3742841_Lg2_226115_MAF20_226115_exon1RosBREEDSNP_SNP_GT_3742841_Lg2_226115_MAF20_226115_exon1marker_locus3742841 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AG_4025888_Lg2_01476_MAF10_203524_exon1RosBREEDSNP_SNP_AG_4025888_Lg2_01476_MAF10_203524_exon1marker_locus4025888 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_GA_4048746_Lg2_01476_MAF30_336678_exon1RosBREEDSNP_SNP_GA_4048746_Lg2_01476_MAF30_336678_exon1marker_locus4048746 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CT_4326366_Lg2_01945_MAF50_1633451_exon1RosBREEDSNP_SNP_CT_4326366_Lg2_01945_MAF50_1633451_exon1marker_locus4326366 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CT_4328900_Lg2_01945_MAF30_MDP0000137471_exon4RosBREEDSNP_SNP_CT_4328900_Lg2_01945_MAF30_MDP0000137471_exon4marker_locus4328900 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1RosBREEDSNP_SNP_TC_4335862_Lg2_01945_MAF40_MDP0000281368_exon1marker_locus4335862 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_TC_4417988_Lg2_RosCOS2816_MAF10_1681929_exon2RosBREEDSNP_SNP_TC_4417988_Lg2_RosCOS2816_MAF10_1681929_exon2marker_locus4417988 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_GT_4854431_Lg2_RosCOS3565_MAF10_MDP0000222804_exon4RosBREEDSNP_SNP_GT_4854431_Lg2_RosCOS3565_MAF10_MDP0000222804_exon4marker_locus4854431 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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