Apple-M432-2013-physical-Malus-domestica

Map Overview

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_GT_4923623_Lg2_RosCOS3565_MAF40_1644877_exon3RosBREEDSNP_SNP_GT_4923623_Lg2_RosCOS3565_MAF40_1644877_exon3marker_locus4923623 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CA_4926338_Lg2_RosCOS3565_MAF40_1675500_exon1RosBREEDSNP_SNP_CA_4926338_Lg2_RosCOS3565_MAF40_1675500_exon1marker_locus4926338 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AG_5329429_Lg2_00158_MAF40_MDP0000602219_exon1RosBREEDSNP_SNP_AG_5329429_Lg2_00158_MAF40_MDP0000602219_exon1marker_locus5329429 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_TC_5370279_Lg2_00158_MAF10_MDP0000276264_exon1RosBREEDSNP_SNP_TC_5370279_Lg2_00158_MAF10_MDP0000276264_exon1marker_locus5370279 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CT_6263352_Lg2_00308_MAF30_MDP0000292425_exon1RosBREEDSNP_SNP_CT_6263352_Lg2_00308_MAF30_MDP0000292425_exon1marker_locus6263352 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AG_6321450_Lg2_00308_MAF50_1632382_exon1RosBREEDSNP_SNP_AG_6321450_Lg2_00308_MAF50_1632382_exon1marker_locus6321450 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AG_6411601_Lg2_MDP0000290496_MAF40_MDP0000290496_exon1RosBREEDSNP_SNP_AG_6411601_Lg2_MDP0000290496_MAF40_MDP0000290496_exon1marker_locus6411601 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AG_6733213_Lg2_01549_MAF10_1640812_exon4RosBREEDSNP_SNP_AG_6733213_Lg2_01549_MAF10_1640812_exon4marker_locus6733213 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CT_7056995_Lg2_RosCOS1581_MAF40_1648387_exon1RosBREEDSNP_SNP_CT_7056995_Lg2_RosCOS1581_MAF40_1648387_exon1marker_locus7056995 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_GA_8931588_Lg2_00407_MAF20_1644091_exon1RosBREEDSNP_SNP_GA_8931588_Lg2_00407_MAF20_1644091_exon1marker_locus8931588 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_GA_10695663_Lg2_01223_MAF50_265612_exon1RosBREEDSNP_SNP_GA_10695663_Lg2_01223_MAF50_265612_exon1marker_locus10695663 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_TC_11380347_Lg2_00159_MAF30_490743_exon4RosBREEDSNP_SNP_TC_11380347_Lg2_00159_MAF30_490743_exon4marker_locus11380347 bp
Apple-M432-2013-physical-Malus-domestica.2GDsnp00159GDsnp00159marker_locus11416721 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1RosBREEDSNP_SNP_TC_11503103_Lg2_01005_MAF40_254568_exon1marker_locus11503103 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_GT_11554302_Lg2_01005_MAF20_1643422_exon1RosBREEDSNP_SNP_GT_11554302_Lg2_01005_MAF20_1643422_exon1marker_locus11554302 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CT_11790983_Lg2_00614_MAF10_247328_exon1RosBREEDSNP_SNP_CT_11790983_Lg2_00614_MAF10_247328_exon1marker_locus11790983 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CT_12888634_Lg2_01552_MAF40_1644276_exon3RosBREEDSNP_SNP_CT_12888634_Lg2_01552_MAF40_1644276_exon3marker_locus12888634 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2RosBREEDSNP_SNP_CT_12901428_Lg2_01552_MAF30_525812_exon2marker_locus12901428 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AG_12942637_Lg2_01552_MAF50_MDP0000683486_exon1RosBREEDSNP_SNP_AG_12942637_Lg2_01552_MAF50_MDP0000683486_exon1marker_locus12942637 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_TC_14548205_Lg2_00987_MAF20_1687368_exon5RosBREEDSNP_SNP_TC_14548205_Lg2_00987_MAF20_1687368_exon5marker_locus14548205 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_TC_16128155_Lg2_02686_MAF20_407655_exon1RosBREEDSNP_SNP_TC_16128155_Lg2_02686_MAF20_407655_exon1marker_locus16128155 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1marker_locus16845711 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_AG_17180168_Lg2_327287_MAF30_327287_exon1RosBREEDSNP_SNP_AG_17180168_Lg2_327287_MAF30_327287_exon1marker_locus17180168 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_CT_19548750_Lg2_01840_MAF20_MDP0000736846_exon2RosBREEDSNP_SNP_CT_19548750_Lg2_01840_MAF20_MDP0000736846_exon2marker_locus19548750 bp
Apple-M432-2013-physical-Malus-domestica.2RosBREEDSNP_SNP_TG_20724858_Lg2_RosCOS358_MAF10_MDP0000629544_exon2RosBREEDSNP_SNP_TG_20724858_Lg2_RosCOS358_MAF10_MDP0000629544_exon2marker_locus20724858 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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