Apple-M432-2013-physical-Malus-domestica

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_AC_18100633_Lg1_01783_MAF10_1654448_exon1RosBREEDSNP_SNP_AC_18100633_Lg1_01783_MAF10_1654448_exon1marker_locus18100633 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_AG_18716844_Lg1_00183_MAF10_108132_exon1RosBREEDSNP_SNP_AG_18716844_Lg1_00183_MAF10_108132_exon1marker_locus18716844 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_CT_18847005_Lg1_02731_MAF10_MDP0000619272_exon1RosBREEDSNP_SNP_CT_18847005_Lg1_02731_MAF10_MDP0000619272_exon1marker_locus18847005 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_TC_22531181_Lg1_RosCOS1157_MAF30_409923_exon1RosBREEDSNP_SNP_TC_22531181_Lg1_RosCOS1157_MAF30_409923_exon1marker_locus22531181 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_AG_22846134_Lg1_MdExp7_MAF40_1635125_exon1RosBREEDSNP_SNP_AG_22846134_Lg1_MdExp7_MAF40_1635125_exon1marker_locus22846134 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_CT_25678674_Lg1_00087_MAF20_MDP0000397231_exon1RosBREEDSNP_SNP_CT_25678674_Lg1_00087_MAF20_MDP0000397231_exon1marker_locus25678674 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_TC_25729269_Lg1_00087_MAF10_MDP0000374392_exon1RosBREEDSNP_SNP_TC_25729269_Lg1_00087_MAF10_MDP0000374392_exon1marker_locus25729269 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_CT_25741771_Lg1_00087_MAF50_MDP0000240636_exon1SNP_CT_25741771_Lg1_00087_MAF50_MDP0000240636_exon1marker_locus25741771 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_GA_26714279_Lg1_01228_MAF40_1626564_exon5RosBREEDSNP_SNP_GA_26714279_Lg1_01228_MAF40_1626564_exon5marker_locus26714279 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_GA_26726638_Lg1_01228_MAF50_1651849_exon2RosBREEDSNP_SNP_GA_26726638_Lg1_01228_MAF50_1651849_exon2marker_locus26726638 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_AC_26758625_Lg1_01228_MAF10_223072_exon1RosBREEDSNP_SNP_AC_26758625_Lg1_01228_MAF10_223072_exon1marker_locus26758625 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1RosBREEDSNP_SNP_CT_26763910_Lg1_01228_MAF40_855624_exon1marker_locus26763910 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_CT_27064466_Lg1_01693_MAF20_95538_exon1RosBREEDSNP_SNP_CT_27064466_Lg1_01693_MAF20_95538_exon1marker_locus27064466 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_AC_27124099_Lg1_01693_MAF10_MDP0000225224_exon2RosBREEDSNP_SNP_AC_27124099_Lg1_01693_MAF10_MDP0000225224_exon2marker_locus27124099 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_TC_28113401_Lg1_108136_MAF20_108136_exon1RosBREEDSNP_SNP_TC_28113401_Lg1_108136_MAF20_108136_exon1marker_locus28113401 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1RosBREEDSNP_SNP_TC_28113428_Lg1_108136_MAF20_108136_exon1marker_locus28113428 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_CT_28113435_Lg1_108136_MAF30_108136_exon1RosBREEDSNP_SNP_CT_28113435_Lg1_108136_MAF30_108136_exon1marker_locus28113435 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_TC_30446117_Lg1_00782_MAF10_679939_exon1RosBREEDSNP_SNP_TC_30446117_Lg1_00782_MAF10_679939_exon1marker_locus30446117 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2RosBREEDSNP_SNP_CT_31736133_Lg1_325795_MAF50_325795_exon2marker_locus31736133 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_TC_31966353_Lg1_RosCOS2794_MAF50_693575_exon1SNP_TC_31966353_Lg1_RosCOS2794_MAF50_693575_exon1marker_locus31966353 bp
Apple-M432-2013-physical-Malus-domestica.1GDsnp01371GDsnp01371marker_locus33685381 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_GA_34174698_Lg1_01678_MAF20_251361_exon1RosBREEDSNP_SNP_GA_34174698_Lg1_01678_MAF20_251361_exon1marker_locus34174698 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_TC_34226610_Lg1_01678_MAF10_1646222_exon1RosBREEDSNP_SNP_TC_34226610_Lg1_01678_MAF10_1646222_exon1marker_locus34226610 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2RosBREEDSNP_SNP_CT_34251015_Lg1_01678_MAF30_MDP0000189607_exon2marker_locus34251015 bp
Apple-M432-2013-physical-Malus-domestica.1RosBREEDSNP_SNP_AG_35457943_Lg1_02092_MAF30_192745_exon1RosBREEDSNP_SNP_AG_35457943_Lg1_02092_MAF30_192745_exon1marker_locus35457943 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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