Apple-M432-2013-physical-Malus-domestica

Map Overview

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_GT_5177248_Lg3_01957_MAF50_MDP0000134469_exon2RosBREEDSNP_SNP_GT_5177248_Lg3_01957_MAF50_MDP0000134469_exon2marker_locus5177248 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_AG_5194078_Lg3_01957_MAF30_502326_exon1RosBREEDSNP_SNP_AG_5194078_Lg3_01957_MAF30_502326_exon1marker_locus5194078 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_CT_5939110_Lg3_01263_MAF10_MDP0000319303_exon11RosBREEDSNP_SNP_CT_5939110_Lg3_01263_MAF10_MDP0000319303_exon11marker_locus5939110 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_TC_6563127_Lg3_01921_MAF20_1676724_exon4RosBREEDSNP_SNP_TC_6563127_Lg3_01921_MAF20_1676724_exon4marker_locus6563127 bp
Apple-M432-2013-physical-Malus-domestica.3GDsnp01921GDsnp01921marker_locus6580215 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_CT_7138274_Lg3_01493_MAF10_MDP0000137959_exon3RosBREEDSNP_SNP_CT_7138274_Lg3_01493_MAF10_MDP0000137959_exon3marker_locus7138274 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_GA_7168817_Lg3_01493_MAF10_1645648_exon1RosBREEDSNP_SNP_GA_7168817_Lg3_01493_MAF10_1645648_exon1marker_locus7168817 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_TC_8475399_Lg3_RosCOS3572_MAF50_MDP0000721948_exon1RosBREEDSNP_SNP_TC_8475399_Lg3_RosCOS3572_MAF50_MDP0000721948_exon1marker_locus8475399 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_CT_9499478_Lg3_02195_MAF40_256975_exon2RosBREEDSNP_SNP_CT_9499478_Lg3_02195_MAF40_256975_exon2marker_locus9499478 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_CT_9957437_Lg3_01990_MAF20_372091_exon1RosBREEDSNP_SNP_CT_9957437_Lg3_01990_MAF20_372091_exon1marker_locus9957437 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_TC_10671767_Lg3_00874_MAF20_637991_exon2RosBREEDSNP_SNP_TC_10671767_Lg3_00874_MAF20_637991_exon2marker_locus10671767 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_AC_10674505_Lg3_00874_MAF10_1678678_exon2SNP_AC_10674505_Lg3_00874_MAF10_1678678_exon2marker_locus10674505 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_AG_11529315_Lg3_02220_MAF30_MDP0000370572_exon5SNP_AG_11529315_Lg3_02220_MAF30_MDP0000370572_exon5marker_locus11529315 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_TC_11533385_Lg3_02220_MAF30_10439_exon1RosBREEDSNP_SNP_TC_11533385_Lg3_02220_MAF30_10439_exon1marker_locus11533385 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_AG_12699579_Lg3_02020_MAF20_54478_exon1RosBREEDSNP_SNP_AG_12699579_Lg3_02020_MAF20_54478_exon1marker_locus12699579 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_TC_12704433_Lg3_02020_MAF40_MDP0000193273_exon5RosBREEDSNP_SNP_TC_12704433_Lg3_02020_MAF40_MDP0000193273_exon5marker_locus12704433 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_GA_14489555_Lg3_01124_MAF20_MDP0000452675_exon1RosBREEDSNP_SNP_GA_14489555_Lg3_01124_MAF20_MDP0000452675_exon1marker_locus14489555 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_AG_15349068_Lg3_02546_MAF50_MDP0000454201_exon2RosBREEDSNP_SNP_AG_15349068_Lg3_02546_MAF50_MDP0000454201_exon2marker_locus15349068 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_AG_18474457_Lg3_00955_MAF50_MDP0000225878_exon5RosBREEDSNP_SNP_AG_18474457_Lg3_00955_MAF50_MDP0000225878_exon5marker_locus18474457 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_CT_18477507_Lg3_00955_MAF10_MDP0000225878_exon1RosBREEDSNP_SNP_CT_18477507_Lg3_00955_MAF10_MDP0000225878_exon1marker_locus18477507 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1RosBREEDSNP_SNP_CT_24483289_Lg3_RosCOS430_MAF10_MDP0000425359_exon1marker_locus24483289 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2RosBREEDSNP_SNP_CT_24565225_Lg3_RosCOS430_MAF20_1659609_exon2marker_locus24565225 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3marker_locus27149833 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1RosBREEDSNP_SNP_TC_27687938_Lg3_00607_MAF30_605396_exon1marker_locus27687938 bp
Apple-M432-2013-physical-Malus-domestica.3RosBREEDSNP_SNP_GA_27691074_Lg3_00607_MAF50_380398_exon1RosBREEDSNP_SNP_GA_27691074_Lg3_00607_MAF50_380398_exon1marker_locus27691074 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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