Apple-M432-2013-physical-Malus-domestica

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_GA_4471268_Lg11_01165_MAF50_MDP0000136407_exon3RosBREEDSNP_SNP_GA_4471268_Lg11_01165_MAF50_MDP0000136407_exon3marker_locus4471268 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_AC_5035350_Lg11_RosCOS2981_MAF30_343989_exon1RosBREEDSNP_SNP_AC_5035350_Lg11_RosCOS2981_MAF30_343989_exon1marker_locus5035350 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_CT_5945674_Lg11_MDP0000163230_MAF30_MDP0000163230_exon2RosBREEDSNP_SNP_CT_5945674_Lg11_MDP0000163230_MAF30_MDP0000163230_exon2marker_locus5945674 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_TC_6507628_Lg11_00621_MAF50_529455_exon1RosBREEDSNP_SNP_TC_6507628_Lg11_00621_MAF50_529455_exon1marker_locus6507628 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_TG_6555653_Lg11_00621_MAF10_MDP0000568382_exon1RosBREEDSNP_SNP_TG_6555653_Lg11_00621_MAF10_MDP0000568382_exon1marker_locus6555653 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_TG_6690536_Lg11_01788_MAF30_339902_exon2RosBREEDSNP_SNP_TG_6690536_Lg11_01788_MAF30_339902_exon2marker_locus6690536 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_AG_6697510_Lg11_01788_MAF30_1668595_exon1SNP_AG_6697510_Lg11_01788_MAF30_1668595_exon1marker_locus6697510 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_CT_6749212_Lg11_01788_MAF10_1680903_exon1RosBREEDSNP_SNP_CT_6749212_Lg11_01788_MAF10_1680903_exon1marker_locus6749212 bp
Apple-M432-2013-physical-Malus-domestica.11GDsnp01483GDsnp01483marker_locus7175511 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_GA_8408827_Lg11_00185_MAF20_1632007_exon3RosBREEDSNP_SNP_GA_8408827_Lg11_00185_MAF20_1632007_exon3marker_locus8408827 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_CT_8416086_Lg11_00185_MAF30_MDP0000729342_exon1RosBREEDSNP_SNP_CT_8416086_Lg11_00185_MAF30_MDP0000729342_exon1marker_locus8416086 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_GA_8445216_Lg11_00185_MAF40_531216_exon5RosBREEDSNP_SNP_GA_8445216_Lg11_00185_MAF40_531216_exon5marker_locus8445216 bp
Apple-M432-2013-physical-Malus-domestica.11GDsnp00185GDsnp00185marker_locus8448275 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_AG_8451493_Lg11_00185_MAF50_1646131_exon1RosBREEDSNP_SNP_AG_8451493_Lg11_00185_MAF50_1646131_exon1marker_locus8451493 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_AG_9904632_Lg11_RosCOS3333_MAF40_MDP0000278972_exon2RosBREEDSNP_SNP_AG_9904632_Lg11_RosCOS3333_MAF40_MDP0000278972_exon2marker_locus9904632 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_TC_9976495_Lg11_RosCOS3333_MAF20_1653958_exon1RosBREEDSNP_SNP_TC_9976495_Lg11_RosCOS3333_MAF20_1653958_exon1marker_locus9976495 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_TG_9980877_Lg11_RosCOS3333_MAF20_MDP0000196079_exon2RosBREEDSNP_SNP_TG_9980877_Lg11_RosCOS3333_MAF20_MDP0000196079_exon2marker_locus9980877 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_GA_10602307_Lg11_00254_MAF10_MDP0000591409_exon1RosBREEDSNP_SNP_GA_10602307_Lg11_00254_MAF10_MDP0000591409_exon1marker_locus10602307 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_GT_11567504_Lg11_02309_MAF40_915969_exon1RosBREEDSNP_SNP_GT_11567504_Lg11_02309_MAF40_915969_exon1marker_locus11567504 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_CT_11585696_Lg11_02309_MAF30_1668440_exon2SNP_CT_11585696_Lg11_02309_MAF30_1668440_exon2marker_locus11585696 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_GA_11765540_Lg11_00037_MAF20_1648078_exon2RosBREEDSNP_SNP_GA_11765540_Lg11_00037_MAF20_1648078_exon2marker_locus11765540 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_AC_11769685_Lg11_00037_MAF50_MDP0000207147_exon2RosBREEDSNP_SNP_AC_11769685_Lg11_00037_MAF50_MDP0000207147_exon2marker_locus11769685 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_CT_13676595_Lg11_RosCOS2909_MAF40_1653132_exon3RosBREEDSNP_SNP_CT_13676595_Lg11_RosCOS2909_MAF40_1653132_exon3marker_locus13676595 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1SNP_TC_20557590_Lg11_01187_MAF30_MDP0000647595_exon1marker_locus20557590 bp
Apple-M432-2013-physical-Malus-domestica.11RosBREEDSNP_SNP_TC_20561104_Lg11_01187_MAF40_MDP0000647595_exon3RosBREEDSNP_SNP_TC_20561104_Lg11_01187_MAF40_MDP0000647595_exon3marker_locus20561104 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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