Apple-M432-2013-physical-Malus-domestica

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NameApple-M432-2013-physical-Malus-domestica
SpeciesMalus x domestica
Map typephysical
Population typeF1
Commentsphysical locations of the markers in Malus x domestica genome assembly
Map unitbp
Maternal parentM.27
Paternal parentM.116
Number of loci750
Number of linkage groups17
Publication[view all]
ContactDaniel Sargent
Stock
NameTypeDetails
M.27_x_M.116population
Map Loci
This map contains 750 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_CT_1783821_Lg12_00116_MAF20_141869_exon1RosBREEDSNP_SNP_CT_1783821_Lg12_00116_MAF20_141869_exon1marker_locus1783821 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_AG_2941332_Lg12_RosCOS1934_MAF20_MDP0000150515_exon1RosBREEDSNP_SNP_AG_2941332_Lg12_RosCOS1934_MAF20_MDP0000150515_exon1marker_locus2941332 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_GA_2970938_Lg12_RosCOS1934_MAF30_1681178_exon3RosBREEDSNP_SNP_GA_2970938_Lg12_RosCOS1934_MAF30_1681178_exon3marker_locus2970938 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_AG_3012853_Lg12_01615_MAF30_MDP0000171662_exon3RosBREEDSNP_SNP_AG_3012853_Lg12_01615_MAF30_MDP0000171662_exon3marker_locus3012853 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_GA_3500620_Lg12_01391_MAF10_1628463_exon1RosBREEDSNP_SNP_GA_3500620_Lg12_01391_MAF10_1628463_exon1marker_locus3500620 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_TC_3538550_Lg12_01391_MAF40_1676938_exon2RosBREEDSNP_SNP_TC_3538550_Lg12_01391_MAF40_1676938_exon2marker_locus3538550 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_GA_5387988_Lg12_02212_MAF10_393859_exon2RosBREEDSNP_SNP_GA_5387988_Lg12_02212_MAF10_393859_exon2marker_locus5387988 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_GA_7044610_Lg12_159023_MAF20_159023_exon1RosBREEDSNP_SNP_GA_7044610_Lg12_159023_MAF20_159023_exon1marker_locus7044610 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_AG_7044670_Lg12_159023_MAF40_159023_exon1RosBREEDSNP_SNP_AG_7044670_Lg12_159023_MAF40_159023_exon1marker_locus7044670 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_GT_12543592_Lg12_MDP0000210506_MAF30_MDP0000210506_exon2RosBREEDSNP_SNP_GT_12543592_Lg12_MDP0000210506_MAF30_MDP0000210506_exon2marker_locus12543592 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_GA_12543650_Lg12_MDP0000210506_MAF20_MDP0000210506_exon2RosBREEDSNP_SNP_GA_12543650_Lg12_MDP0000210506_MAF20_MDP0000210506_exon2marker_locus12543650 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_CA_12543851_Lg12_MDP0000210506_MAF20_MDP0000210506_exon2RosBREEDSNP_SNP_CA_12543851_Lg12_MDP0000210506_MAF20_MDP0000210506_exon2marker_locus12543851 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_CT_15159754_Lg12_MDP0000134241_MAF10_MDP0000134241_exon3RosBREEDSNP_SNP_CT_15159754_Lg12_MDP0000134241_MAF10_MDP0000134241_exon3marker_locus15159754 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_TG_21317748_Lg12_01426_MAF20_411066_exon1SNP_TG_21317748_Lg12_01426_MAF20_411066_exon1marker_locus21317748 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_TC_21387181_Lg12_01426_MAF40_1680072_exon2RosBREEDSNP_SNP_TC_21387181_Lg12_01426_MAF40_1680072_exon2marker_locus21387181 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_GA_23976782_Lg12_01798_MAF10_MDP0000146103_exon2RosBREEDSNP_SNP_GA_23976782_Lg12_01798_MAF10_MDP0000146103_exon2marker_locus23976782 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_CT_25266872_Lg12_MDP0000897253_MAF20_MDP0000897253_exon1RosBREEDSNP_SNP_CT_25266872_Lg12_MDP0000897253_MAF20_MDP0000897253_exon1marker_locus25266872 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_AG_28378785_Lg12_12122_MAF40_12122_exon1RosBREEDSNP_SNP_AG_28378785_Lg12_12122_MAF40_12122_exon1marker_locus28378785 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1RosBREEDSNP_SNP_AG_28743645_Lg12_RosCOS3117_MAF40_MDP0000542342_exon1marker_locus28743645 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_AG_28774744_Lg12_RosCOS3117_MAF30_1648278_exon2RosBREEDSNP_SNP_AG_28774744_Lg12_RosCOS3117_MAF30_1648278_exon2marker_locus28774744 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_CT_29019870_Lg12_01769_MAF20_491569_exon2RosBREEDSNP_SNP_CT_29019870_Lg12_01769_MAF20_491569_exon2marker_locus29019870 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_CT_29063582_Lg12_00334_MAF40_1650968_exon1RosBREEDSNP_SNP_CT_29063582_Lg12_00334_MAF40_1650968_exon1marker_locus29063582 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2RosBREEDSNP_SNP_CA_29070012_Lg12_00334_MAF30_MDP0000163756_exon2marker_locus29070012 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_GA_31080088_Lg12_00915_MAF20_MDP0000306076_exon4RosBREEDSNP_SNP_GA_31080088_Lg12_00915_MAF20_MDP0000306076_exon4marker_locus31080088 bp
Apple-M432-2013-physical-Malus-domestica.12RosBREEDSNP_SNP_GT_31094539_Lg12_00915_MAF30_405687_exon1RosBREEDSNP_SNP_GT_31094539_Lg12_00915_MAF30_405687_exon1marker_locus31094539 bp
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Contact
NameDetails
Daniel Sargent
First name:Daniel
Last name:Sargent
Title:researcher
Institution:East Malling Research (EMR)
Address:New Road, East Malling, Kent ME19 6BJ, UK
Country:Itlay
Email:dan.sargent@emr.ac.uk
Publication
YearPublications
2013Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fern√°ndez FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
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