Apple-Honeycrisp_Consensus-F1

Map Overview

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NameApple-Honeycrisp_Consensus-F1
SpeciesMalus x domestica
Map typegenetic
Population typeF1
Population size413
CommentsComposite map combining five mapping populations that have Honeycrisp as one of the parents.
Map unitcM
Maternal parentHoneycrisp
Paternal parentPitmaston Pineapple
Number of loci3632
Number of QTL9
Number of linkage groups17
Publication[view all]
ContactJames Luby
Stock
NameTypeDetails
Honeycrisp_x_Pitmaston_Pineapple-F1population
Map Loci
This map contains 3,632 marker loci:
Download Table
Linkage GroupMarker NameLocus NameTypePosition
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_TC_3094248_Lg1_02894_MAF50_285661_exon1SNP_TC_3094248_Lg1_02894_MAF50_285661_exon1marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_AG_18706948_Lg11_00212_MAF10_MDP0000204530_exon1RosBREEDSNP_SNP_AG_18706948_Lg11_00212_MAF10_MDP0000204530_exon1marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_CT_154698_Lg1_00288_MAF50_285078_exon1SNP_CT_154698_Lg1_00288_MAF50_285078_exon1marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1GDsnp02894GDsnp02894marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1GDsnp00370GDsnp00370marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_CT_2754910_Lg1_00370_MAF10_MDP0000147384_exon7RosBREEDSNP_SNP_CT_2754910_Lg1_00370_MAF10_MDP0000147384_exon7marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_AC_121548_Lg1_00288_MAF30_MDP0000151845_exon1SNP_AC_121548_Lg1_00288_MAF30_MDP0000151845_exon1marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_CT_14220624_Lg9_00958_MAF50_MDP0000834237_exon2SNP_CT_14220624_Lg9_00958_MAF50_MDP0000834237_exon2marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_GA_124604_Lg1_00288_MAF50_MDP0000929646_exon2RosBREEDSNP_SNP_GA_124604_Lg1_00288_MAF50_MDP0000929646_exon2marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_CT_16660949_Lg13_00890_MAF30_MDP0000285581_exon1RosBREEDSNP_SNP_CT_16660949_Lg13_00890_MAF30_MDP0000285581_exon1marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_TC_18732067_Lg4_00148_MAF10_220085_exon1RosBREEDSNP_SNP_TC_18732067_Lg4_00148_MAF10_220085_exon1marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1RosBREEDSNP_SNP_CT_5940163_Lg1_00152_MAF50_1642197_exon1marker_locus0 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_AG_4746500_Lg1_MDP0000213515_MAF40_MDP0000213515_exon1RosBREEDSNP_SNP_AG_4746500_Lg1_MDP0000213515_MAF40_MDP0000213515_exon1marker_locus0.93 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_AG_5237634_Lg1_01826_MAF20_1669688_exon1RosBREEDSNP_SNP_AG_5237634_Lg1_01826_MAF20_1669688_exon1marker_locus1.97 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_CT_5273262_Lg1_01826_MAF30_99144_exon1RosBREEDSNP_SNP_CT_5273262_Lg1_01826_MAF30_99144_exon1marker_locus1.97 cM
Apple-Honeycrisp_Consensus-F1.1GDsnp01826GDsnp01826marker_locus1.97 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_TC_3466990_Lg12_01391_MAF10_1661773_exon1RosBREEDSNP_SNP_TC_3466990_Lg12_01391_MAF10_1661773_exon1marker_locus2.57 cM
Apple-Honeycrisp_Consensus-F1.1GDsnp00152GDsnp00152marker_locus2.57 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_AC_8789324_Lg1_02428_MAF30_21164_exon1RosBREEDSNP_SNP_AC_8789324_Lg1_02428_MAF30_21164_exon1marker_locus2.57 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_TC_8781083_Lg1_02428_MAF10_1668209_exon1RosBREEDSNP_SNP_TC_8781083_Lg1_02428_MAF10_1668209_exon1marker_locus2.57 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_AG_8776668_Lg1_02428_MAF20_157084_exon1RosBREEDSNP_SNP_AG_8776668_Lg1_02428_MAF20_157084_exon1marker_locus2.57 cM
Apple-Honeycrisp_Consensus-F1.1GDsnp02428GDsnp02428marker_locus2.57 cM
Apple-Honeycrisp_Consensus-F1.1RosBREEDSNP_SNP_CT_20598176_Lg11_01187_MAF10_561225_exon1RosBREEDSNP_SNP_CT_20598176_Lg11_01187_MAF10_561225_exon1marker_locus2.78 cM
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Contact
NameDetails
James Luby
First name:James
Last name:Luby
Institution:Department of Horticultural Science, University of Minnesota, St. Paul, MN
Address:St Paul, MN 55104
Country:United States
Email:lubyx001@umn.edu
Map QTL
This map contains 9 QTL:
Download Table
Linkage GroupNameTypeStartStopPeak
Apple-Honeycrisp_Consensus-F1.2qSCALD.HoneyCon-LG02.14QTL0 cM8 cM2.8 cM
Apple-Honeycrisp_Consensus-F1.2qSCALD.HoneyCon-LG02.15QTL0 cM4 cM1.2 cM
Apple-Honeycrisp_Consensus-F1.2qSBD.HoneyCon-LG02.14QTL0 cM4 cM2.3 cM
Apple-Honeycrisp_Consensus-F1.2qSBD.HoneyCon-LG02.15QTL0 cM4 cM1.3 cM
Apple-Honeycrisp_Consensus-F1.13qSCALD.HoneyCon-LG13.14QTL34 cM36 cM34.9 cM
Apple-Honeycrisp_Consensus-F1.16qSCALD.HoneyCon-LG16.14QTL24 cM38 cM30.8 cM
Apple-Honeycrisp_Consensus-F1.16qSCALD.HoneyCon-LG16.15QTL32 cM42 cM35.8 cM
Apple-Honeycrisp_Consensus-F1.16qSBD.HoneyCon-LG16.14QTL34 cM40 cM37.5 cM
Apple-Honeycrisp_Consensus-F1.16qSBD.HoneyCon-LG16.15QTL32 cM38 cM35.1 cM
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