Early McIntosh

Germplasm Overview
NameEarly McIntosh
AliasN/A
GRIN IDPI 589023
TypeCultivar
SpeciesMalus x domestica
DescriptionN/A
Origin CountryN/A
Origin DetailUSA
PedigreeN/A
Maternal ParentYellow Transparent
Paternal ParentMcIntosh
Maternal Parent ofN/A
Paternal Parent ofN/A
Phenotypic Data[view all 20]
SSR Genotype Data[view all 25]
SNP Genotype Data[view all 10295]
MapN/A
DNA LibraryN/A
SequenceN/A
CommentsFruit: resembles McIntosh but is less aromatic and more upright; ripens in mid-Aug.; flavor excellent; good for home and local markets. Tree: vigorous; productive; biennial in habit, tendency toward small size unless thinned very early.
ReferenceHoward NP, Peace C, Silverstein KATS, Poets A, Luby JJ, Vanderzande S, Durel CE, Muranty H, Denancé C, and van de Weg E. The use of shared haplotype length information for pedigree reconstruction in asexually propagated outbreeding crops, demonstrated for apple and sweet cherry. Accepted to Horticulture Research.
Ssr Genotype Data
Total 25 records
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# Dataset Marker Marker Type Genotype Marker_Allele
1Apple_SSR_Genotype_Volk_2020CH01f02genetic_marker174|182CH01f02_174; CH01f02_182
2Apple_SSR_Genotype_Volk_2020CH01H01genetic_marker118|120CH01H01_118; CH01H01_120
3Apple_SSR_Genotype_Volk_2020CH02d08genetic_marker212|216CH02d08_212; CH02d08_216
4Apple_SSR_Genotype_Volk_2020GD12genetic_marker155|157GD12_155; GD12_157
5Apple_SSR_Genotype_Volk_2020GD142genetic_marker131|139GD142_131; GD142_139
6Apple_SSR_Genotype_Volk_2020GD147genetic_marker135|141GD147_135; GD147_141
7Apple_SSR_Genotype_Volk_2020GD15genetic_marker146|146GD15_146; GD15_146
8Apple_SSR_Genotype_Volk_2020GD162genetic_marker238|242GD162_238; GD162_242
9Apple_SSR_Genotype_Volk_2020GD96genetic_marker157|185GD96_157; GD96_185
10Gao_Chinese_National_Repository_Apple_2015CH05c06genetic_marker122|136CH05c06_122; CH05c06_136
11Gao_Chinese_National_Repository_Apple_2015BGT23bgenetic_marker199|199BGT23b_199; BGT23b_199
12Gao_Chinese_National_Repository_Apple_2015CH01f07agenetic_marker194|214CH01f07a_194; CH01f07a_214
13Gao_Chinese_National_Repository_Apple_2015CH01f03bgenetic_marker163|163CH01f03b_163; CH01f03b_163
14Gao_Chinese_National_Repository_Apple_2015CH02a04genetic_marker-9|-9CH02a04_-9; CH02a04_-9
15Gao_Chinese_National_Repository_Apple_2015CH05d08genetic_marker139|159CH05d08_139; CH05d08_159
16Gao_Chinese_National_Repository_Apple_2015CH05h12genetic_marker174|182CH05h12_174; CH05h12_182
17Gao_Chinese_National_Repository_Apple_2015CH04e03genetic_marker218|236CH04e03_218; CH04e03_236
18Gao_Chinese_National_Repository_Apple_2015KA4bgenetic_marker157|159KA4b_157; KA4b_159
19Gao_Chinese_National_Repository_Apple_2015CH04h02genetic_marker187|195CH04h02_187; CH04h02_195
20Gao_Chinese_National_Repository_Apple_2015CH05b06genetic_marker189|205CH05b06_189; CH05b06_205
21Gao_Chinese_National_Repository_Apple_2015CH02b12genetic_marker161|161CH02b12_161; CH02b12_161
22Gao_Chinese_National_Repository_Apple_2015CH03d07genetic_marker206|208CH03d07_206; CH03d07_208
23Gao_Chinese_National_Repository_Apple_2015CH05d04genetic_marker193|231CH05d04_193; CH05d04_231
24Gao_Chinese_National_Repository_Apple_2015CH04g07genetic_marker164|176CH04g07_164; CH04g07_176
25Gao_Chinese_National_Repository_Apple_2015CH05e04genetic_markerTRP|TRPCH05e04_TRP; CH05e04_TRP
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Publications
YearPublication
2021Howard, N.P., Peace, C., Silverstein, K.A.T. et al. The use of shared haplotype length information for pedigree reconstruction in asexually propagated outbreeding crops, demonstrated for apple and sweet cherry. Hortic Res 8, 202 (2021). https://doi.org/10.1038/s41438-021-00637-5
Snp Genotype Data
Total 10,295 records
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#DatasetMarker NameAlleleGenotype
1Apple_SNP_genotype_Howard_2021SNP_FB_0411238T/CA | A
2Apple_SNP_genotype_Howard_2021SNP_FB_0411240T/GA | B
3Apple_SNP_genotype_Howard_2021SNP_FB_0411246A/GB | B
4Apple_SNP_genotype_Howard_2021SNP_FB_1079904A/CB | B
5Apple_SNP_genotype_Howard_2021RosBREEDSNP_SNP_TC_3094248_Lg1_02894_MAF50_285661_exon1T/CA | B
6Apple_SNP_genotype_Howard_2021RosBREEDSNP_SNP_GA_3099492_Lg1_02894_MAF40_411283_exon1A/GA | B
7Apple_SNP_genotype_Howard_2021SNP_FB_0313817A/GA | A
8Apple_SNP_genotype_Howard_2021SNP_FB_1089803T/CA | A
9Apple_SNP_genotype_Howard_2021SNP_FB_1089798A/GA | B
10Apple_SNP_genotype_Howard_2021SNP_FB_0400909T/CB | B
11Apple_SNP_genotype_Howard_2021SNP_FB_0400916A/GB | B
12Apple_SNP_genotype_Howard_2021SNP_FB_0400919T/CA | B
13Apple_SNP_genotype_Howard_2021SNP_FB_0400922A/GB | B
14Apple_SNP_genotype_Howard_2021SNP_FB_0400921T/CB | B
15Apple_SNP_genotype_Howard_2021SNP_FB_1079977A/CB | B
16Apple_SNP_genotype_Howard_2021RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1A/CA | B
17Apple_SNP_genotype_Howard_2021RosBREEDSNP_SNP_AC_121548_Lg1_00288_MAF30_MDP0000151845_exon1T/GA | B
18Apple_SNP_genotype_Howard_2021SNP_FB_0409694A/CB | B
19Apple_SNP_genotype_Howard_2021SNP_FB_0409675T/CA | B
20Apple_SNP_genotype_Howard_2021SNP_FB_0409674T/GB | B
21Apple_SNP_genotype_Howard_2021SNP_FB_0197405A/CA | B
22Apple_SNP_genotype_Howard_2021SNP_FB_0197414T/CA | B
23Apple_SNP_genotype_Howard_2021SNP_FB_0197767T/CB | B
24Apple_SNP_genotype_Howard_2021SNP_FB_0530079A/GA | A
25Apple_SNP_genotype_Howard_2021SNP_FB_0530074T/CB | B
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Cross References
External references for this accession
DatabaseAccession
GRINPI 589023
Fruit and Nut Cultivars Database11385
Phenotypic Data
Phenotypic Data
Total 20 trait scores
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# Dataset Descriptor Value
1APPLE.FIREBLIGHTFBBLNAT5
2APPLE.FIREBLIGHTFBSHNAT5
3APPLE.MORPHOLOGIC.00CALYXBASIN5
4APPLE.MORPHOLOGIC.00ENDUSE8,8
5APPLE.MORPHOLOGIC.00FRTFLSHCOL1+1
6APPLE.MORPHOLOGIC.00FRTFLSHFLA1
7APPLE.MORPHOLOGIC.00FRTFLSHFRM2
8APPLE.MORPHOLOGIC.00FRTFLSHOXI1
9APPLE.MORPHOLOGIC.00FRTGRNDCOL5,4
10APPLE.MORPHOLOGIC.00FRTLENGTH62
11APPLE.MORPHOLOGIC.00FRTRUSSET10
12APPLE.MORPHOLOGIC.00FRTRUSSLOC1
13APPLE.MORPHOLOGIC.00FRTRUSSTYP1
14APPLE.MORPHOLOGIC.00FRTSIZUNIF1
15APPLE.MORPHOLOGIC.00FRTSTEMLEN20
16APPLE.MORPHOLOGIC.00FRTSTEMTHK2
17APPLE.MORPHOLOGIC.00FRTTEXTURE1
18APPLE.MORPHOLOGIC.00FRTWEIGHT4
19APPLE.SPRING.95-96FLOWERSIZE28
20APPLE.SPRING.95-96FLWRCOLOR1,3
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