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Marker Overview
| Name | RosBREEDSNP_SNP_AG_3942532_Lg4 |
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| dbSNP ID | ss475883964 |
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| SNP Array ID | | 480K SNP array for apple: | AX-115194249 | | IRSC 9K SNP array for apple: | RosBREED_SNP_AG_3942532_Lg4 | | 20K SNP array for apple: | RosBREED_SNP_AG_3942532_Lg4 |
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| Type | SNP |
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| SNP Alleles | T/C |
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| Probe 1 | RosBREED_SNP_AG_3942532_Lg4.probe: TCAAGCCAAAGACCTACACATACGATTTTCTAAACTAAGGACCCAGTAAT |
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| 5' Flanking Sequence | TTTTTGGTTTTCATATCGTGTACCTTTCTTCCGCAGGACCACATCCTTCTCAACACCACC
CATCCTCTATCCTTAATCAATCCTCCTTTATCACTTGTATTTGCTCCTTATATCTAACCA
AAAAGCGCAAACCAAAAACTTGAAACGAAAT |
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| 3' Flanking Sequence | ATTACTGGGTCCTTAGTTTAGAAAATCGTATGTGTAGGTCTTTGGCTTGATGCTGTTAAT
GATATGTATATTTACATAACTTTGTTTTCTTGTTAATTGTTGTAGAAGAGCAACCAAGTA
TCATGGAACACAAACATAAGCTAGTCGCTGC |
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| Species | Malus x domestica |
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| Publication | [view all] |
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| Contact | Michela Troggio
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| Comment | Previously given SSID ss475884124 is incorrect (Edge-Garza et al. TGG, 2021) |
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
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| 2021 | Edge-Garza DA, Villamil-Castro M, Main D, Hardner C. Correction of database SNP accession numbers misassigned to SNPs of the 8K IRSC apple SNP array. 2021 Tree Genetics & Genomes 17:17 |
| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
| 2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
Sequence
>RosBREEDSNP_SNP_AG_3942532_Lg4 ID=RosBREEDSNP_SNP_AG_3942532_Lg4; Name=RosBREEDSNP_SNP_AG_3942532_Lg4; organism=Malus x domestica; type=genetic_marker; length=75bp
ACCAAAAAGCGCAAACCAAAAACTTGAAACGAAAT[A/G]ATTACTGGGT
CCTTAGTTTAGAAAATCGTATGTGT
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