MDC006289.406, MDC006289.406 (contig) Malus x domestica

Overview
NameMDC006289.406
Unique NameMDC006289.406
Typecontig
OrganismMalus x domestica (Apple)
Sequence length6940
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
Alignments
Feature NameTypeLocationAnalysis
MDP0000175774 mRNA MDP0000175774:4532..6902+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
MDP0000175774_exon_1 CDS MDP0000175774_exon_1:4532..4925+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
MDP0000175774_exon_2 CDS MDP0000175774_exon_2:5475..6902+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1 genetic_marker RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1:3346..3346. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12159849_Lg1 genetic_marker RosBREEDSNP_SNP_TC_12159849_Lg1:652..652. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_12159851_Lg1 genetic_marker RosBREEDSNP_SNP_GA_12159851_Lg1:654..654. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_12159869_Lg1 genetic_marker RosBREEDSNP_SNP_CT_12159869_Lg1:672..672. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GT_12159895_Lg1 genetic_marker RosBREEDSNP_SNP_GT_12159895_Lg1:698..698. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_12161105_Lg1 genetic_marker RosBREEDSNP_SNP_AG_12161105_Lg1:2196..2196. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12161132_Lg1 genetic_marker RosBREEDSNP_SNP_TC_12161132_Lg1:2223..2223. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_12161138_Lg1 genetic_marker RosBREEDSNP_SNP_AG_12161138_Lg1:2229..2229. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AC_12161735_Lg1 genetic_marker RosBREEDSNP_SNP_AC_12161735_Lg1:2722..2722. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AC_12162041_Lg1 genetic_marker RosBREEDSNP_SNP_AC_12162041_Lg1:3028..3028. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12162059_Lg1 genetic_marker RosBREEDSNP_SNP_TC_12162059_Lg1:3046..3046. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12162359_Lg1 genetic_marker RosBREEDSNP_SNP_TC_12162359_Lg1:3346..3346. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12162425_Lg1 genetic_marker RosBREEDSNP_SNP_TC_12162425_Lg1:3412..3412. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_12162440_Lg1 genetic_marker RosBREEDSNP_SNP_GA_12162440_Lg1:3427..3427. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_12162494_Lg1 genetic_marker RosBREEDSNP_SNP_AG_12162494_Lg1:3481..3481. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12162524_Lg1 genetic_marker RosBREEDSNP_SNP_TC_12162524_Lg1:3511..3511. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12163011_Lg1 genetic_marker RosBREEDSNP_SNP_TC_12163011_Lg1:3998..3998. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12163045_Lg1 genetic_marker RosBREEDSNP_SNP_TC_12163045_Lg1:4032..4032. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AC_12163227_Lg1 genetic_marker RosBREEDSNP_SNP_AC_12163227_Lg1:4214..4214. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_12163244_Lg1 genetic_marker RosBREEDSNP_SNP_CT_12163244_Lg1:4231..4231. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_12163311_Lg1 genetic_marker RosBREEDSNP_SNP_GA_12163311_Lg1:4298..4298. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12163329_Lg1 genetic_marker RosBREEDSNP_SNP_TC_12163329_Lg1:4316..4316. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12163366_Lg1 genetic_marker RosBREEDSNP_SNP_TC_12163366_Lg1:4353..4353. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_12163380_Lg1 genetic_marker RosBREEDSNP_SNP_TC_12163380_Lg1:4367..4367. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_12163384_Lg1 genetic_marker RosBREEDSNP_SNP_GA_12163384_Lg1:4371..4371. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_12163487_Lg1 genetic_marker RosBREEDSNP_SNP_CT_12163487_Lg1:4474..4474. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_12163776_Lg1 genetic_marker RosBREEDSNP_SNP_GA_12163776_Lg1:4763..4763. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CA_14360436_Lg16 genetic_marker RosBREEDSNP_SNP_CA_14360436_Lg16:6338..6338. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_14360453_Lg16 genetic_marker RosBREEDSNP_SNP_TC_14360453_Lg16:6355..6355. Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr3 chromosome chr3:4895731..4902670+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
Sequences
The following sequences are available for this feature:

contig sequence

>MDC006289.406 ID=MDC006289.406; Name=MDC006289.406; organism=Malus x domestica; type=contig; length=6940bp
GAATTTTAGCAAGAGTTGGAACTAGTTTTTGGGAGAGAATGGTGAGCTAT
ATATAGGGATATGGCCGGTCCTATTAGGAAAATAGGGACCGGCCATTTAG
GTATTTTTTGGGTGTAAATTGTGGTTAATTAGCCATTAATAGTTTAACTA
GGCAATAAATCTATTAATGGACTAATTAACATATTTTGAAAGAAATTATA
TAGGGAGTTATGGAATGATTAAAATAATTAGCTAATTGATTAGCTAAAAA
TGGAAAAATGAGGTAGAAAATATATGGAATGAAATAGGTTTTAGGAGTTA
CCTTGTAGAAGGGATTTGATGAGATAGGTTTTGAATTGTTACCTATTTTG
GGCACTTTTGATTTAGTTGAAGGATGATTGCCCGCTGCTCATGCGTAAGA
ATCTCGTTGTACCTTAAGGGTATTTTTGTCCTCTTTTATCCTGTCGCATT
GTGATTATTTTTGGCTCCACAGTTTTAGCAGCATCTTTTTGGCTCATGCA
TATCTTGGTGACACTCATGCATGTGCCATTCAGTTGGAGACGGAGATTGG
TGACTGCACTTTTAAAATTATGACGGACAACTACTAGTGTACTTAACTTG
TGTTTGATTTTGTGGCCTTGTCTCAATGTCGACAATTTGCGCACTATATT
TTTGCTTTTGAGGAAGCAGCACATGAAAGATTCATGCCAAAGGGTAAGGC
AAATACATGTAATAATTTGAAGACAAAAAATCACTAATTCAGGTCAATAC
ATTTTCTATTTGCATTGTAGAAATTTTGATTTTGTTCATCACTTATTGTC
TCCTCTTGTATGAAAAAAGTTGTTCTTTCTAATACCATGGAATTTTTTAT
TTTGCATTGTGAAAATTTTGATTTTGTTCCGCTTTTTTACCGTGATTTCG
GCAACTATTTTCGTCGATTGAAGTATTGTCACGTCCCGGACTCAAAATGA
GTGAAAGAAATGATYTCGGGCCCATATGCGAATAAAAATAAAATAAATAA
AAAGAAACTKAAACAGGTTTGAAAACTAGCTCATTTAAAAATGATGCGGA
AGAATAAATAGGCTAGTACGCCAGAATGAATGGGAAATTGATTTATTTAA
TATACGATTCAAATACCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT
TACTTCTAAATTGATCTGCAGCCTTAGATGCTTGGATTCGACTCCCTGAT
CACTGATGTGAAAATTGTACTGTAATTCGACTTAACTCAAGTTATGAAAA
TACAGTAAACAAGTTGGAAGGCTACAAAGTTCCCTCTGTCTCACTTTCCT
TCTTTTTCTTCGGGTCTAAAACTTGGAAAACAAATGGTGTTTTCCTCGGA
CTAGGATTGTCTGCCCTCCACTTCCGATGTCATTTCCGTTTCCTCCTATT
TGTGTGGTCACGGTTAAGCCACGTCAACATTCTATATTACTATTTATTTT
TGTCTTATTATATCTATAAAAAATATATATATAAAATGTTGACGTAACTT
AACCGTGACCACACAAAACAGGAGGGCACTGGAAGTGGAGGGCAGACAAT
CCTTGTCCGTTTTCCTCTTCATTCTTTTCTCTTTCTTTGTGGTCCAATCA
AAGAACAAGAGGGCACGAAAGGGCACTGGAAGTGGAAGGACAGACGACCT
TTGTCCCCAATCAAAATCCTTCATATGTGACCCCATGTCATCMTTCATAT
GTGGCTAGCTATCAATTTGTCACGTGGSGAAGTCAACCATCTGTCGCTGC
CACATGTCAATCATTTAGTCGTCCTCTAAACTGACAAATATTCCGAAAGA
TACTATCAAAATCACCTCTAGTTTCATCCTACTACTTCCGGATCATCAAT
TGTTCTCAATCAAAATAATATTTTTCCCAATATCTTAGTCATCCGAAATA
ACGACTACTTGTGAAACATTAATAATTTCAGGGTTTCAAAGCTATGAACC
TTCATCTATTCTTCACAATCTTCAAGTTAGTATGCTTTGTTTCTACATTA
ATAGCCGTTTTGGAGTCGGGTGTTTAGAAACTTATAAATCTGGTTTTGGC
CGATGGTTTTGGTCGGTTGCCGGCTAGAATTGATTGTCGGGATAGTTATA
AAAGTTGATCCTTATGTTGAGTTCTATATGCCTGTAAAATTTGGTGTGTC
AGAAAATTGGGTTTCTAGTTTCATAATCATATCAACACTAAATCAAGCCC
AGAAAGGTGGCGTTAGAAAGATTTGTATATCCCTCACAAACTTGTAGAAG
GAACCTTCCTTAAAAATCACCATCTTGACCGGCTTATAGAACAACTAAGC
CCAAAAATTCAAACTGATAGCACTACGCAKTCAACCTTCTTTTCTTTGCC
ACAATCAAATGGCATGGAATAAAAATCTTGAATTTTTACACTATTAACTT
GAAAGATCACAAACACACAGAATTACTTCAAATTCCTTTTTTTTGATAAC
TTTTTCCCTACCAACGTAAATATAGAATAAAGTATTAAAATTATACCAAA
ATAGTTAATAAATTATATCTAAGACTATGGTAAAAATATAGAATAATAGT
TGATTCATCAGCAAGTATTGAAATAATAGTTTAACACTATTTTATTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNACACATAACTAGAGACAGCAAGAGA
GAGAATAGTGGGAATCATTCATCCCACAGTCCGACGCATGGATTCTCCCC
AATTCAACGAAAGTCCTCTTCATTATGTACACAAAATAACAACAAACACG
TTTTTGAGTAATTATATCTCTGCCTGCCCTTTTACTTTTGACTTTAGAGA
AAGCGGCTCATGTGATGTACGATTCATGCCTAACTTTAAAGGCAAATACA
TTATTCTAACAAACTATTAAAACTTAAAGGGGTAATTTGGATTTCAGAGA
ATTTTAATGGATTTTTTTTAAGTAACAAATTTGAAAAGATTTTAATAGAT
TTATAATTTTACTTGGATTTTGACAAATGTATATGGATTCCTATTATAGA
TTTTTATGGATTTGAATGGATTTCTTTAATGGATTTCTTAGGATGTTAGT
TGACTCCTACAACATAAAATGAATTTGTTCGTGGCAGGAATTTCCTTGGA
GGATGTTCCCTGGCCGACGAGCACACAGCTCCCCGGGATGGTTGGCGCCG
GTTGAGGCTTCCTGTCAGGCTTCTGCTTTACTGGCGGGCTTGTCGGGCAA
AGCTTAGTCGGGCAAGGCTTGTCGGGCAAAGCTTAGTCGGGCAAGGCTTG
TCGGGCAAAGTTCTTCGGGCAAGGCTGAAAGAGAAGGACAGAGTTAACTT
TGAAATAATGCCTTTATGGGGCCTTAGGTGTAGGCCTTCCCTTTCTCTTG
GATTCAATAATATTTCTTCAGGAGGAGTGACGAGGTGCTTTGAGAGGGAA
AGAGAAGCACTTCTTGCTTTCAAACAGGGCCTCGTGGATCACTACAATCT
CCTCTCTTCGTGGGGAAGAGAAGATCACAAACAAGATTGTTGCAAATGGG
TAGACGTCCATTGCAGCAACCGAACCAACCATGTTACTCAACTTCATCTT
GGACGGGAAAGTCTCGTGCGTGTCGTACAGCGTGTCCCGCCTCCCCCAGT
TCTTAGGGATGAAACCAGAAATTTAACTAAGAGGGGGCATCTTAAAAAAT
TTGAGCTCCTTTTTTGGACAAATAAAGTTAGTTCTTTTACAAATGCTGAA
AAATTAATTACAAAATGCCTAATTTTATTACTCTATTGTCTAATTTTGTC
TTTAATTGTTGACAATCTAATGTTCATTTGTACTAATTAACCAAATACAT
GTAACTCAATAAGGTTTAGACATTAGTGTGTGAGAAAAATATATAAGACG
GAGGAGCATTTGAAAACTAAAAAAAGATTTTCACTATTTTAATATGATTA
ATTGAATAATCTGCCAAGCAAAAAAAAATAGAAATGATTAATTGAATAAT
TTGTCCTGAGGGACCACGTGTCGTGAGCCGTTCCTGCTGCGACTCAGTGC
TTTGTTCGCAGAGATGAGCGATAGGATCGTCTCCGTGGCGGTCGACTGTA
AGCAGAGCATGTTCTACGGGACCACCGTCCGTGGGGTCAAGTTCTGGGAC
CCTACTTCTTCTTCATAAACCCGAGGCCGACGTACGAGGCCACGTTTCTG
GACCGGCAGCCGGACAACATGTCGGACGACAAGTTTCTAATTCCACAAAA
TACAAAAAGACTTATAAAATGTAAACAGAACGAAACAATCAACGCGGAAT
TGTGTTGATTGTTGCAGGCTTTGTCATTATTTTGGAGAGAAGAGTCAGCG
TCTAATTACTACACCTACGTACAGAAAAGTAGGTGGTCCACTCACACATG
TTTCATACTTGACCATTTGAGTCAAGACAACTCAGTGTGTGGATCGTATT
GTGAACTATTACGTAGTGACCCAGCCTTATAAGATACTCGCATCTTTCCT
TGTGCTCCTAAATCAATTATGATCGTACACTTCTTCTTCTTCATTCTTCA
ATCATCTTTGCCTTGATTTTGTTGAATTAAGATGGAGAACGACGGAATCA
GGTGCTTGAAGAAATTCTTTCACACTTCCATTGTGGTGCTACTTTTTCTA
CAATGTTTCAACCCTTCCCTATCCTCTGGATTCTATAATGTTTCTTTGGG
TTTCGGAGCAATTGGCCACCGGGTGGTGACGAGGTGCATAAAGAGTGAAG
GGGAAGCACTCCTTTCTTTCAAACAAGGTCTGATTGATGACTACAATCTC
CTCTCCTCCTGGGGAAGAGAAGAACACAAGCAAGATTGTTGCAAATGGCT
TGGCATCCACTGCAGCAACCGAACCAACCATGTTACTCAACTYGATCTTG
GATGGAATCATATGAATGAAGTTTACTCACTTCAACAKAAAGGACAGCAG
GAGTATCCCGWATATTACTTTCRAGGTAAAATGATGAGTCCTAAACTAAT
TGAGTTGMAGCATTTGAAATATTTSGACYTTTCTTCCRTTAACTTCACTK
GGACCCAGCTTCCAGATTTCATTGGTTCTCTTTCCAATTTAAGACACCTC
GRTCTCTGGKATGCTTCTTTTGGTGGTCGAATTCCAACTCAGATYGGAAA
CCTTACYCACTTGCAATATCTTGATCTCASATCCAATCACTTTGCTAATK
TAGAAAAYMTSAATTCATGGCTRCCTCRTCTTTCTTCTTTAACATATTTG
GACCTGAGTTTCAACAATCTCAGTAATGTTCCTGACTGGATGGAARYAGT
TAATAAGCTCCCTAAACTTACAAACTTGTCTCTGTCTTATTGCAGTCTTC
CTTCTCCTCTAATTCATTCCAGTACTCTTTTTAACATAAATTCTTCTAAA
TCTCTTGCTCATGTTGATCTCAGTGACAACCAACTCACATCTTCTTCCAT
ATTTCTTTGGTTGTCCAAATACAATGCCAGCCTTGGTCATCTTGATCTCA
GATACAATAACTTTGCTAATGTAGAAAATCTGAATTCATGGCTGCCTCAT
CTTTCTGCTTTAACATATTTGGACCTGACTTACAGCAATCTCAGTAATGT
TCCTGATTGGCTGGAAGCAGTTAATAAGCTCCCTAAACTTACAAACTTGA
CACTGTACAATTGCGGTCTTCCTTCTCCTCTAATTCATTCCAGTACTCTT
TTTAACATAAATTCTTCTAGATCTCTTGCTCATGTTGATCTCCGTTACAA
CCAACTCACTTCTTCCATATTTCTTTGGTTGTCCAAATACAATGCCAGCC
TTGTTCATCTTGACCTCTCTCACAACCAGTTAACTGGCTTATTTCCCGAT
GTCATTGGAAACATGAGCTCTCTTGCATATCTAGATCTCTCTTCTAACCA
ATTTGAAGGGGTGATTTCAGAAAGTCATTTCTCGGGTCTCTCCAGATTAA
GATCTTTGTATCTGTCCTCTACCTCACTAACTTTAAACTTCCATTCTAAA
TGGGTTCCTCCCTTCCAATTGGATTATATAATCTTGGGGTCTTGCAAGAT
GGGTCCACATTTTCCAAATTGGCTTCAAACTCAGAAAAGTTATTGGAGCC
TTGATATTTCTAATGCAGGAATTTCTGATATCCTTCCAAGTTGGTTTTGG
GAAAGGCTGTCTCATGCTCGTGAAATTGGTTATGTAGATCTCTCCAACAA
CCAAATCAGAGGAACAATTCCAAACTCGCAAATCAATTTTGTATGTTTCT
CTCGTCAACTAAATTTGAGTTGGAACCAATTGGAAGGTCAAGTCCCTCCT
TTCCTATTGAAAGCCTCGTCATCCCTCTTTCTCTCCCACAATAAATTTTC
AGGGTTGTTTTCTTTCTTGCTTCCAGTTAACGCAAGTCATTTAAGATTGC
TTGATCTCTCGAGCAACCATTTACATGGAGAACTTCCCGATTGCTGGACT
CATTTCAAAAATCTTTTAATTCTTGATTTGAGTGACAACCGTTTTTTTGG
GAGACTTCCTACCACAATGGGCTCTTTATTATCAATTCAAACATTGAACC
TAAACAATAATGGATTTGTGGGAGAATTGCCTTCATCTTTGGAGAACTGT
ACAAGTCTCATGGTTTTTGATGTTGGAGAAAATAAATTATCAGGTTTGAT
ACCTAAATGGTTAGGGGTTGGACTTCCAAATTTGACTATCCTTATCCTCC
GTTCTAATCACTTCTATGGAAGCATTCCATCACAGTTGTGTAATATGGGA
AGCATTCAAATTTTGGATTTCTCGATGAATAACATCTCCGGAAGTATACC
CAAATGTCTCAACAGTTTGACTAATTTGGCTCTAAGAGGAAGTTCAAGTC
TAACTATCAGTCATTACTATAATGTATCCTCGAGTGGTCTCGCTTTTCTG
TATGACGACGAGGCATCCTTGATATGGAAAGGCATAATGTCCAAATACAA
AAGTACTTTGGGGCTTGTAAAGAGTATTCATCTATCAAGT
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