MDC007487.196, MDC007487.196 (contig) Malus x domestica

Overview
NameMDC007487.196
Unique NameMDC007487.196
Typecontig
OrganismMalus x domestica (Apple)
Sequence length5459
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
Alignments
Feature NameTypeLocationAnalysis
MDP0000179728 mRNA MDP0000179728:72..419- Malus x domestica Whole Genome v1.0 Assembly & Annotation
MDP0000179728_exon_1 CDS MDP0000179728_exon_1:72..419- Malus x domestica Whole Genome v1.0 Assembly & Annotation
MDP0000505066 mRNA MDP0000505066:3455..4713- Malus x domestica Whole Genome v1.0 Assembly & Annotation
MDP0000505066_exon_1 CDS MDP0000505066_exon_1:3455..3847- Malus x domestica Whole Genome v1.0 Assembly & Annotation
MDP0000505066_exon_2 CDS MDP0000505066_exon_2:4660..4713- Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2 genetic_marker RosBREEDSNP_SNP_GT_29342518_Lg3_02463_MAF50_MDP0000798662_exon2:3601..3601. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_29340746_Lg3 genetic_marker RosBREEDSNP_SNP_AG_29340746_Lg3:5373..5373. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_29340761_Lg3 genetic_marker RosBREEDSNP_SNP_GA_29340761_Lg3:5358..5358. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_29341214_Lg3 genetic_marker RosBREEDSNP_SNP_CT_29341214_Lg3:4905..4905. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TG_29341302_Lg3 genetic_marker RosBREEDSNP_SNP_TG_29341302_Lg3:4817..4817. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GT_29341309_Lg3 genetic_marker RosBREEDSNP_SNP_GT_29341309_Lg3:4810..4810. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CA_29341792_Lg3 genetic_marker RosBREEDSNP_SNP_CA_29341792_Lg3:4327..4327. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_29341850_Lg3 genetic_marker RosBREEDSNP_SNP_TC_29341850_Lg3:4269..4269. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GT_29341897_Lg3 genetic_marker RosBREEDSNP_SNP_GT_29341897_Lg3:4222..4222. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_29341934_Lg3 genetic_marker RosBREEDSNP_SNP_TC_29341934_Lg3:4185..4185. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_29342010_Lg3 genetic_marker RosBREEDSNP_SNP_TC_29342010_Lg3:4109..4109. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_29342308_Lg3 genetic_marker RosBREEDSNP_SNP_CT_29342308_Lg3:3811..3811. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CA_29342428_Lg3 genetic_marker RosBREEDSNP_SNP_CA_29342428_Lg3:3691..3691. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_29342441_Lg3 genetic_marker RosBREEDSNP_SNP_GA_29342441_Lg3:3678..3678. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_29342484_Lg3 genetic_marker RosBREEDSNP_SNP_CT_29342484_Lg3:3635..3635. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GT_29342518_Lg3 genetic_marker RosBREEDSNP_SNP_GT_29342518_Lg3:3601..3601. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_29342885_Lg3 genetic_marker RosBREEDSNP_SNP_GA_29342885_Lg3:3234..3234. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_29342891_Lg3 genetic_marker RosBREEDSNP_SNP_GA_29342891_Lg3:3228..3228. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GT_29342974_Lg3 genetic_marker RosBREEDSNP_SNP_GT_29342974_Lg3:3145..3145. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_29343031_Lg3 genetic_marker RosBREEDSNP_SNP_CT_29343031_Lg3:3088..3088. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_29343058_Lg3 genetic_marker RosBREEDSNP_SNP_CT_29343058_Lg3:3061..3061. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_29343157_Lg3 genetic_marker RosBREEDSNP_SNP_CT_29343157_Lg3:2962..2962. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_29343187_Lg3 genetic_marker RosBREEDSNP_SNP_AG_29343187_Lg3:2932..2932. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_29343188_Lg3 genetic_marker RosBREEDSNP_SNP_CT_29343188_Lg3:2931..2931. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_29343258_Lg3 genetic_marker RosBREEDSNP_SNP_GA_29343258_Lg3:2861..2861. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_GA_29344245_Lg3 genetic_marker RosBREEDSNP_SNP_GA_29344245_Lg3:1874..1874. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_CT_29344312_Lg3 genetic_marker RosBREEDSNP_SNP_CT_29344312_Lg3:1807..1807. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_TC_29344445_Lg3 genetic_marker RosBREEDSNP_SNP_TC_29344445_Lg3:1674..1674. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AG_29344475_Lg3 genetic_marker RosBREEDSNP_SNP_AG_29344475_Lg3:1644..1644. Malus x domestica Whole Genome v1.0 Assembly & Annotation
RosBREEDSNP_SNP_AC_29345455_Lg3 genetic_marker RosBREEDSNP_SNP_AC_29345455_Lg3:664..664. Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr3 chromosome chr3:24745043..24750501- Malus x domestica Whole Genome v1.0 Assembly & Annotation
Sequences
The following sequences are available for this feature:

contig sequence

>MDC007487.196 ID=MDC007487.196; Name=MDC007487.196; organism=Malus x domestica; type=contig; length=5459bp
AAACAAAAAAAATTTACAACATTTAAAAAAGAAAAGAAAAATAGGAATGG
AAGAAGCAAAATTGACAGGACCTGAAACTCTTCATCACTAGCGAGAGCGT
GAAACGCGGCCTCGAGCTCAGCGAGCGCGTGCATTAGGGTCTCCGGGACG
TACTTCCCGCCATACTTACCGAACCGGCCGAACGAATCGGGCCGGGGCAG
AACCGGGAAGGCGCCGTTATCGTTTTTCTCATCCATCTGTAGAGCGGCGG
AATCCCGGGTGAGAGTGCAGGAGATGGATGTAGGGGMAGCGGTGGCGCGG
GAGGTAAACTTGAAGGGAAGTTGGGTGGAGGAGGAGGAGTAGGGTTTTGG
GAGCGGCGGGGCGATAAGGCGGTGGGTTTTGCAAGTGGTGGAGGCGCTAC
CGGAGGCTGCTGCTGCCATTTATGAGGTTTCGGAAGTGACACGCCCACGC
AATTGAGAGGAGAAACGTCGCCTCTTTTTCTTTTCTCTTTTTGTTTGGAG
TAGAATAGTGGAGGCGAAAAAAGTTGTGTGAGAAGCTAACCTAGAGGCTT
TTGACGATACGTATAAGCAAATAGATACAAAAAAAAAAGAGTTAAATATC
TAGAAACTAGTTAGAGCAAGGAAAAAGAAGATAAGGGACCTAAACTAAGT
GAGGTGCATCAAGTATAAGAATGGAAATGTTCTTATTACAGATAACGCGG
TCAAAGACAGATGGAGATGTTATTTTCATAAACTTTTCAATGAAAGACAT
GAAAGGAGTACTTCTTTGGGAAAGCTGAGTAACTCAGAATAGTGTAAAAA
ATACTCATTTTACCGTTGAATTAGGAAGGAAGTGGTTGTAGCATTGAAAA
AGATGAAGCATAGAAAAGTAGTGGGCCCAAATGATATACCGATCAAAGTG
TGGAAAGTTTTGGGAGAGACAGGTATAGCATGGCTCATAGACATTTTCAA
CAGGATTTTGAAAACGAAGAAGATGYCAAATGAGTGGCAAAATAGCACAT
TGGTGCCTATCTGCAAGAATAAGGGTGACGTACAAAATTGCATGAACTAT
AGGTGGATTAAGTGAATGAGTCATAGCTCTGAGAGAGAGTAATTGAGCAT
AGACTGAGGCAAGAGACATGGGTCTCGGACAACCAATTCGAGTTCATGAC
AGGACGCTTAACTATGGAGGCAATATATCTTTTACAAAGATTGATGGAAA
TATATAGAGATATAAAAAAAAGAATTGTACATGGTCTTTATAGATTTGGA
AAAGGCATATGATAGGGTCCTAAGAGACATTCTCTAAAGGATTTTAGAGA
AGAAAAGAGTACGAGTAGCATATATCCAAGCTATAAAAGATATGTATGAT
GAAGCAAAGATTGCCCTAAGAACTCACGAAGGACAAACCGAAGGCTTCTC
CAAAACTGTAGGGTTACATCAAAGCTCATCTTTAAGTCCTTACCTTTTTG
CTTTGGTAATGGATAAGTTAACGAGACATATTTAAGATGATATTTATTGG
TGTATGCTTTTCGCAGACGATATAGTGTTGATAGATGAAACTTAGGAATG
AGTAAATGCGAAACTTAACCTTTGGAGAGAAGTGTTGAAATCTAAAGGTC
TTCACCTAAGTCGGTCAAAGACAAAGTATATGGAGTGCAAGTTTAATGCA
AACGGAGGCTTAATTGAGTTAGGATGAGGATTGAAGATCAGGAAGTGCCA
AAGAGCGACCGTTTTCGCTACCTAGGATTCATCTTGCAAAAAAACGTTGG
ATGAAGACCTCAACCATATAATACAAGTTGGATGGATGAAGTGGAAAAGT
GCATCTGGGGTGTTGTGTGACCGTCGTATGCCACATAAGCTCAAGGAAAA
ATTTTATAGGATAGCAATAAGGCCGACAATACTTTATGGCACGAAATATT
GGGCGGTGAAGTATCAACACATACATAAAATGGGTGTAGCAGAGATRAGA
ATGCTTCGTTGGATGTGTGGGCACACGAGGAAGGATAAGAWTAGGAATGA
AGATATCTGAGATAAAATATGAGTAGCTGAAATTGAAGAAAAGATGAGAG
AAAATCGGTTACGGTGGTTTGGACATGTGAAACGAAGGCCTACTGATGCT
TCGGTTAGAAGATGTGATTACGGGACAAATGTTTAGGGCCGAAGGGGTAG
AKGGAGACCTAAGAAGACTTTGGAATAGACTTTAAGAAAAGACTTAGAAT
ACTTAGATCTAACGGAAGAAGTGGYAGATGACCGAGCGCAATAGCGTTCT
AGGGTTCATATAGYCAACCCTACTTAGTGGGAAAAAGTTTTGTTGTTGTT
GTTTGGAGTAGAGTTTCTAACGACTTTTCTAACCTCCTGGGGACAAAGGT
AAAAGGTTAGGYCGAGTCAAGAGATTTTTCAGAGTYGCCTGATACGGTTT
AGTATACTAATAACAATAAAAATGATTGAAAATWAAAAAAAAAATTCAAC
TAAATTATATTGATACATGATGTATTCAAYTGTGTTTCTCAGAAACTGAA
AAATTTATCGGTAGAGTAAAGGGATTTACCTAAAAGTTCGGATTTTTTTC
ATTCAATTACCCACCAAATTGTAAGATTACCAAAATATGTTTTGTGCACG
TTGGATGTATTATGTATTCACATTGTTGAGCAAAAATTGTACATAATATG
TAAACAAATAATTCACTCGATACAATTTCCCCCTCGTTCATTTTTCCGAA
GAGGATTTTATTAATTTGAGTTCAACTCATTCTAAACTATGCGTCTATTA
ACTACAATCCTCCGTCAAAAAGGAAAAACCCTTTGATTCTAATATGAATA
AATCGTAATTTAGGGATTTGGGTGTTTGATTTTGATTTTGTGACTGCACC
TAGGTAGAGCCCTAGATTGCCTACATACCCTTATTGAGGGATCAAGTCAC
GCGTAGTTCATGTATTTGTTGGAGTTTGATGTCTTGTGCAGTTTCAACTC
GTGCAGGCAAGGAGCATTTGATGTTTTATGTAGTTTAGGCTCTTGTAGGC
GAGGACTTCGAGTCACTTGGAGCTTTTAATGCCTAGTGCAATTTTAGCTC
ATGCGGGTTAGAACTTTGAGCCATTGGAGCTTTTGATGCCTCAGCAATTT
CTGCAACGCTTTTGTCCCTCTTTGTATACTTTTACCGTCAATCTCCTCTG
TGCTTTCCTGTCTCCTCTTTGAAGACTTGAATTTTCCAAAGTCTCGAATA
GTACTGCACGGCCGTCGGGTATGGCTGCAGAAACAGCTTTTGAGCTTCTG
CAATCTGTTTCAAAATGCAACTTTAGAGCCACTTCCGCTGCAGCTTGTAT
TTGCTTCAATGCGATGAATGCCATTTCAATTCCCTGCTTTTTGACCGAAA
CGGTGGCAGAGACGATTTTRATGCGATGAATGCCATTTCAATTCCCTGCT
NNNNNNNNNNNNNNNNGGCAGAGACGATTTTGGACCGGGGGACTTTTTCT
TTCCTCAAATTCTCGGCTTTCTTGCCTTCGGATGTCTTCCGCATTTTCTG
AAGGCTTTGGGAGTCGACAGCAGCAGGGAGCGGTGAGCGTCTCTCTTTCT
TCTCTGCTCGCCAACCGCATCTTTGGCTTCGTGTTCCGCTGCCTTCTCTC
CTTCTGCAACTGTTTCTTTGGCATCGTCTTCGTTGTCCCTTACTGCATGC
TTGATACCCAATGTTGCTTCGCCGCGGCTGCAAGTGTGGAGTGTTGCATT
GTCCCTGGGGAGGTTAACACTGGCCGTAGTGATTGCTGCAGTAGCCGTGC
TTTGCTTCTGATGGCTGCGATGGTGGACTTTCACCTTTTTCTTTGCTTTG
GTGAAAATAAGAAGAGCCAAGTCTTCTTTCTTTTCCTCTGCAAAAAGCTG
AACCAACACCAAGACGAAGAACAAATTATAAACAATAATTTATACCTAGA
ACTTTTGCTCCCTTTGCCGTGTCTTCCTTGCTTTCCCTTTTTCCTTCTGC
CGTGAACCCCTCCGTACTCCTCTCTTCCTTTTTGTTGGTTCTCTGCTGCT
TTTTCTGCGTTTCATTTTTTTTCCAGTTTGCTTTGGCCTTTAGTGCCTTT
TATAGGCGAACGGTCGAAACGGCAGTTGTGGTTAGTAGGTGAGTGCTACC
AAGTTCGAAGGGCAAACCGACAAATATGCCTTTAGGCTGTGAGATTTATT
AGCTTATTGAGACCAAATACAAAGAATGAAATTTATGTCTTGATAAACAA
TAAAAAAGGTTACTTTGGATTCGTTTCAAGTATATATTGGGAAATTTAAC
CAAAAATAATAAGAGGGGAGCATCCATTTGGTCTTATCCACATACTACCA
AGTACCAACCATAGAAAATTAGAAATGCATATGCCTCTCATATCGGCATT
ACTACAAAAGATAAAGTGATTTTCGCGCTTCCCTCGATTTCCGGCCTCAA
TGGTTACGGTCTTCAAACAAATTTCCACTTTGCACTTCTATCGTAATCGA
AAAATGAAAAAAAACAATCTGTACTTCGGTCCCCYTTTAGTATACTCTAA
GACTGAGGCAACATACCGCGCATTCTATCTAGTAACATCCTTAAATAACA
TTCAGAAAACTTTGATGGTATTCGTAAAATCRACTCACTTCCATACATTC
TGATTTGCCAAAACTAAAAGAGGTCCGTACATTACACATTCCACATGCTA
GAAAGGTASGTGCGCCGCCAAATTGTACCCATCAATCCATTGAGTTTTCG
TGCAGCAGAACATACTCCCGGCTGCAAAAAAACCAAATTATGAGGACGGT
GTCAAAATATGCGACATAAATATTAGCAACAGTACAGAATTGACTGCAAA
TCATCAGAACGGATGAACAAATTTGAAGAGATATACAGAAGTTTTCCCAA
TCAACCAACCTAACCAAGGAAATCATCTTTCAAACTTGAAAATAAAGTCG
ACCAGGAAATATGAATCACTTGGAGCTGATTGCAGTTACAAACACGTAGG
GGTGATATTTGATTGTTCATATGTTCCAGGCTTTCAAAGCTCTAGTTTGT
TTCCATGCATGTCATTCTTCAATTGATTCCAATTACTTACACATCTAGTC
CTAGATACTACATGAACATGAGGACTATTGTTCAACGTAATCCAAATATA
GTAACATTCTAAATCANACAAATTCAATTCAGGTATTCACCTGCAGGATC
ACTACAGTAATCGGAAAGGAAGAGAGCWTWATAAAAAAGATGAGTATTTT
CAGGGGGACAACAATCTAAGCATCACAAAGCTCAAGTTAGATAATTGATT
AGTGACGTACCTACTATTACCAAATCTGATTGTATCCTTTTCCATAAGTT
CATAATATCGTTGAGGTTCGATTGCATTTTCCTGCAACAACAAAGTAAAT
GTTAAAACCAAGTTCCTGCAAATACAGTAAAACCAAGCTTTACTCTACAC
AACACAAATGCAAAAACCAATAAATCTAATGAGCCACTTACATTAAGAAA
AGTTTTATT
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