GDsnp01772, GDsnp01772 (genetic_marker) Malus domestica

Marker Overview
NameGDsnp01772
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
5' Flanking SequenceTCTCTTGGGGATTCAGCAGAACAAG
3' Flanking SequenceGACTCCAATTCCAAGGATCAAACTTA
SpeciesMalus x domestica
Publication[view all]
ContactCindy F. Verdu
Contact
NameDetails
Cindy F. Verdu
First name:Cindy
Last name:Verdu
Title:Researcher
Institution:INRA
Address:INRA, UMR1345 Institut de Recherche en Horticulture et Semences, Beaucouze, France
Country:France
Email:cindyverdu@gmail.com
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2012Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745.
2014Verdu CF, Guyot S, Childebrand N, Bahut M, Celton J-M, Gaillard S, Lasserre-Zuber P, Troggio M, Guilet D, Laurens F. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS ONE. 2014; 9(10):e107103.
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map1N/A67.9GDsnp01772View
2Apple-X3259X3263-F11N/A55.08GD_SNP01772View
3Apple-X5210X8402-F1-ConsensusLG1N/A49.7GD_SNP01772View
4Apple-X5210X8402-F1-X5210LG1N/A53.9GD_SNP01772View
Sequence
>GDsnp01772 ID=GDsnp01772; Name=GDsnp01772; organism=Malus x domestica; type=genetic_marker; length=201bp
AGAAGAAATTTCTACCCAAGAAGAATAGCCCTGATAGATTGCAACTCGTT
TACAACATCACTTATCTCTTTTCGGTCTCTTGGGGATTCAGCAGAACAAG
MGACTCCAATTCCAAGGATCAAACTTAAGCACTCCTCCACNTTTTCAGAT
CTTGCGCTGNATTGGTTGGGGGTGGTATTGGTAGTGATACCTTCTTGAAC
A