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Marker Overview
| Name | GDsnp00882 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | A/T |
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| 5' Flanking Sequence | AAAGTGCCCGGTGTATAAATTCATCTGTAT |
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| 3' Flanking Sequence | GAAGTTCTTGATCACTGAGTCTGAGAGTGG |
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| Species | Malus x domestica |
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| Publication | [view all] |
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| Contact | Cindy F. Verdu
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| Comment | Just need to add in aliases |
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Publications
| Year | Publication |
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| 2010 | Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839. |
| 2012 | Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745. |
| 2017 | Norelli J, Wisniewski M, Fazio G, Burchard E, Gutierrez B, Levin E, Droby S.. Genotyping-by-sequencing markers facilitate the identification of quantitative trait loci controlling resistance to Penicillium expansum in Malus sieversii. PLoS ONE. 2017; 12(3):e0172949. |
| 2014 | Verdu CF, Guyot S, Childebrand N, Bahut M, Celton J-M, Gaillard S, Lasserre-Zuber P, Troggio M, Guilet D, Laurens F. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS ONE. 2014; 9(10):e107103. |
Sequence
>GDsnp00882 ID=GDsnp00882; Name=GDsnp00882; organism=Malus x domestica; type=genetic_marker; length=201bp
TTCATCATACAGTTGTCAAAATAATCGTTGCATGTAACGCTTGCCTGACC
ACCTACCCCGAGCACGGACAAAAGTGCCCGGTGTATAAATTCATCTGTAT
WGAAGTTCTTGATCACTGAGTCTGAGAGTGGTTTGAATGCATGTTATGTG
ATGAGAATTTTGCCAGATTTGAAAGAGTTCTAGGGCTGTGAGCGTTCATT
T
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