GDsnp01857, GDsnp01857 (genetic_marker) Malus domestica

Marker Overview
NameGDsnp01857
dbSNP IDss475882353
SNP Array ID
480K SNP array for apple:AX-115181793
IRSC 9K SNP array for apple:GD_SNP01857
20K SNP array for apple:GD_SNP01857
50K SNP array for apple:AX-105188350
TypeSNP
SNP AllelesA/G
Probe 1GD_SNP01857.probe: GAGTCTCACTTGCAGGCAGCAAAAAGGGCTCTAAGGTACGTAAATGGGAC
5' Flanking SequenceAGGTGCTCTTCCTATCATCCTGATCACTAGCGTAGTTGCTGTTCGTATACCCAATAAGCT TCTCANCTCCTCTCTTCTTGTAGAACGTCCTCAAATCAAT
3' Flanking SequenceGTCCCATTTACGTACCTTAGAGCCCTTTTTGCTGCCTGCAAGTGAGACTCAGTAGGACAT TCCATGTATCTACTAATCAAACTGACAATAAACATTAAGT
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2012Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745.
2014Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2016Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map11N/A47.9GDsnp01857View
2Pear-PM-F1-PEAR35N/A49.67GDsnp01857View
3Pear-PM-F1-Moonglow5N/A44.16GDsnp01857View
4Apple-FjxPL-F1-2013LG11N/A68.95GDsnp01857View
5Apple-Honeycrisp_Consensus-F111N/A42.55GD_SNP01857View
6Pear-PH-CG-2017LG5N/A280.37GD_SNP01857View
7Apple-RosBREED-3.9K-201911N/A42.55GD_SNP01857View
Sequence
>GDsnp01857 ID=GDsnp01857; Name=GDsnp01857; organism=Malus x domestica; type=genetic_marker; length=201bp
AGGTGCTCTTCCTATCATCCTGATCACTAGCGTAGTTGCTGTTCGTATAC
CCAATAAGCTTCTCANCTCCTCTCTTCTTGTAGAACGTCCTCAAATCAAT
YGTCCCATTTACGTACCTTAGAGCCCTTTTTGCTGCCTGCAAGTGAGACT
CAGTAGGACATTCCATGTATCTACTAATCAAACTGACAATAAACATTAAG
T