CH01f02, CH01f02 (genetic_marker) Malus x domestica

Marker Overview
NameCH01f02
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
94 °C for 5 min, 35x (94 °C for 60 s, 50 °C for 60 s, 72 °C for 60 s), 72°C for 10 min
Primer 1CH01F02.F: ACCACATTAGAGCAGTTGAGG
Primer 2CH01F02.R: CTGGTTTGTTTTCCTCCAGC
Primer 3CH01f02-Forward: ACCACATTAGAGCAGTTGAGG
Primer 4CH01f02-Reverse: CTGGTTTGTTTTCCTCCAGC
Product Length174-206
164-168
Max Length168
PolymorphismP_ CH01f02
Publication[view all]
ContactC. Gessler
Andreas Peil
Miyuki Kunihisa
Publications
YearPublication
2004Yamamoto T, Kimura T, Saito T, Kotobuki K, Matsuta N, Liebhard R, Gessler C, Weg W.E. van de, Hayashi, T. Genetic linkage maps of Japanese and European pears aligned to the apple consensus map. Acta Horticulturae. 2004; 663:51-56.
2009Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
1998Theoretical and applied genetics. Theor. appl. genet. June 1998. v. 96 (8) p. 1069-1076. ISSN 0040-5752; THAGA6
2014Wöhner TW, Flachowsky H, Richter K, Garcia-Libreros T, Trognitz F, Hanke M, Peil A. QTL mapping of fire blight resistance in Malus ×robusta 5 after inoculation with different strains of Erwinia amylovora. Molecular breeding. 2014; 34(1):217-230.
2014Emeriewen O, Richter K, Kilian A, Zini E, Hanke M, Malnoy M, Peil A. Identification of a major quantitative trait locus for resistance to fire blight in the wild apple species Malus fusca. Molecular breeding. 2014; 34(2):407-419.
2012Schouten HJ, van de Weg WE, Carling J, Khan SI, McKay SJ, van Kaauwen MPW, Wittenberg AHJ, Koehorst-van Putten HJJ, Noordijk Y, Gao Z, Rees DJG, Van Dyk MM, Jaccoud D, Considine MJ, Kilian A. Diversity arrays technology (DArT) markers in apple for genetic linkage maps. Molecular breeding 2012 29:645–660
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2014Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Andreas Peil
First name:Andreas
Last name:Peil
Title:Researcher
Institution:Institute for Breeding Research on Fruit
Address:Kulius Kuhn-Institut (JKI), Pillnitzer Platz 3a, 01326
Country:Dresden, Germany
Email:andreas.peil@jki.bund.de
Miyuki Kunihisa
First name:Miyuki
Last name:Kunihisa
Institution:NARO Institute of Fruit Tree Science
Address:2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:Japan
Email:miyuky@affrc.go.jp
Phone:81-29-838-6437
Keywords:fruit drop
Relationships

This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
bloom dateqBD.STKxGS-ch12Malus x domesticaQTL
date of green pointqGP.STKxGS-ch12Malus x domesticaQTL


This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
RCH01F02.RMalus x domesticaprimer
FCH01F02.FMalus x domesticaprimer
CH01f02-ForwardCH01f02-ForwardMalus x domesticaprimer
CH01f02-ReverseCH01f02-ReverseMalus x domesticaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CH01f02CH01f02Malus x domesticamarker_locus
CH01f02CH01f02-103.228Malus x domesticamarker_locus
CH01f02CH01f02-125.651Malus x domesticamarker_locus
CH01f02CH01f02-115.08Malus x domesticamarker_locus
CH01f02CH01f02-33Malus x domesticamarker_locus
CH01f02CH01f02-19.7Malus x domesticamarker_locus
CH01f02CH01f02-46.4Malus x domesticamarker_locus
CH01f02CH01f02-62.9Malus x domesticamarker_locus
CH01f02CH01f02-60.849Malus x domesticamarker_locus
CH01f02CH01f02-65.053Malus x domesticamarker_locus
CH01f02CH01f02-148.92Malus x domesticamarker_locus


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-DT-F112N/A44CH01f02View
2Apple Integrated map12N/A37.1CH01f02View
3Apple-STKxGS-F112N/A37.7CH01f02View
4Pear-BH-F1Ba12N/A60.4CH01f02View
5Apple-FD-F1-2006F12N/A55.4CH01f02View
6Apple-FD-F1-2006D12N/A55.6CH01f02View
7Apple-IM-F1-IdaredIda LG 12N/A41.9CH01f02View
8Apple-IM-F1-Mr5Mr5 LG 12N/A25.9CH01f02View
9Apple-MAL0045_x_Idared-F1-MfuscaLG12N/A27CH01f02View
10Apple-PF-F1-2012ch12N/A46CH01f02View
11Apple-MM-F112N/A31.6CH01f02View
12Apple-OA-F1-OrinOR12N/A45CH01f02View
13Apple-M432-2012LG12N/A34.1CH01f02View
14Apple-RGTxGD-F1-2015GD_12N/A44.72CH01f02View
15Apple-DP-F1-2013D12N/A33.9CH01f02View
16Apple-DP-F1-2013P12N/A41CH01f02View
17Apple-JGxWSH-F1LG12N/A38.7CH01f02View
18Apple-WSH-F1LG12N/A39CH01f02View
19Pear-BD-F1-2014-geneticLG12N/A46.6CH01f02View
20Pear-Bartlett-F1-2007Ba12N/A44.3CH01f02View
21Pear-La_France-F1-2007La12N/A36.7CH01f02View
22Apple-FD-Discovery-F1-2003D12N/A50.5CH01f02View
23Pear-Rcf-F1-femaleLG12N/A103.23CH01f02View
24Pear-M-F1-maleLG12N/A125.65CH01f02View
25Pear-RM-F1-IntegratedLG12N/A115.08CH01f02View
26Apple-JM7xS63-F1J12N/A33CH01f02View
27Apple-JM7xS63-F1S12N/A19.7CH01f02View
28Pear-Ba-F1-2013Ba12N/A46.4CH01f02View
29Pear-BD-F1-2015LG12N/A62.9CH01f02View
30Pear-Bayuehong-F1-2015LG12N/A60.85CH01f02View
31Pear-Dangshansuli-F1-2015LG12N/A65.05CH01f02View
32Pear-integrated_consensus_map-IPCG-2017LG12N/A148.92CH01f02View