CH03d10, CH03d10 (genetic_marker) Malus x domestica

Marker Overview
NameCH03d10
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1CH03d10.primer 1: CTCCCTTACCAAAAACACCAAA
Primer 2CH03d10.primer 2: GTGATTAAGAGAGTGATCGGGG
Product Length166-182
PolymorphismP_ CH03d10
Publication[view all]
ContactC. Gessler
Andreas Peil
Zhen Han
Publications
YearPublication
2009Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2014Wöhner TW, Flachowsky H, Richter K, Garcia-Libreros T, Trognitz F, Hanke M, Peil A. QTL mapping of fire blight resistance in Malus ×robusta 5 after inoculation with different strains of Erwinia amylovora. Molecular breeding. 2014; 34(1):217-230.
2012Schouten HJ, van de Weg WE, Carling J, Khan SI, McKay SJ, van Kaauwen MPW, Wittenberg AHJ, Koehorst-van Putten HJJ, Noordijk Y, Gao Z, Rees DJG, Van Dyk MM, Jaccoud D, Considine MJ, Kilian A. Diversity arrays technology (DArT) markers in apple for genetic linkage maps. Molecular breeding 2012 29:645–660
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2015Cui MS, Yang LL, Han YY, Zhang Q, Zhao YB, Li CM, Han YP, Wang Y, Chen DM, Yang FQ, Zhang XZ, Han ZH. Genetic mapping reveals sophisticated responses of Malus domestica to Botryosphaeria dothidea isolates. Journal of Phytopathology. 2015; 163:42–53.
2015Ben Sadok I, Tiecher A, Galvez-Lopez D, Lahaye M, Lasserre-Zuber P, Bruneau M, Hanteville S, Robic R, Cournol R, Laurens F. Apple fruit texture QTLs: year and cold storage effects on sensory and instrumental traits. Tree Genetics & Genomes 2015 11:119
2004Plant Breeding, 123(4):321
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
primer 1CH03d10.primer 1Malus x domesticaprimer
primer 2CH03d10.primer 2Malus x domesticaprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fruit diameterqFRDIA.JGD-G2.2008Malus x domesticaQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CH03d10CH03d10Malus x domesticamarker_locus
CH03d10CH03d10-46Malus x domesticamarker_locus
CH03d10CH03d10-36.6Malus x domesticamarker_locus
CH03d10CH03d10-81.2Malus x domesticamarker_locus
CH03d10CH03d10-81.494Malus x domesticamarker_locus
CH03d10CH03d10-80.816Malus x domesticamarker_locus
CH03d10CH03d10-121.58Malus x domesticamarker_locus


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-C16xC17-F1-20122N/A54.35CH03d10View
2Apple-FD-F1-2006D2N/A37.8CH03d10View
3Apple-FD-F1-2006F2N/A48.9CH03d10View
4Apple Integrated map2N/A64.2CH03d10View
5Apple-IM-F1-IdaredIda LG 2N/A75CH03d10View
6Apple-IM-F1-Mr5Mr5 LG 2N/A46.6CH03d10View
7Apple-2000-2012-F1ch2N/A68CH03d10View
8Apple-PF-F1-2012ch2N/A55CH03d10View
9Apple-MM-F12N/A55.2CH03d10View
10Apple-JGD-F1-BotcankerJ2N/A24.5CH03d10View
11Apple-X3259X3263-F12N/A61.94CH03d10View
12Apple-GDxJ-F1-2012LG2N/A59.6CH03d10View
13Apple-M432-2012LG2N/A50.4CH03d10View
14Apple-JGD-F1-2014G2N/A58.2CH03d10View
15Apple-FD-F1-2013LG2N/A48.4CH03d10View
16Apple-RGxPI6-F1LG2N/A75.3CH03d10View
17Apple-X5210X8402-F1-X5210LG2N/A77.1CH03d10View
18Apple-X5210X8402-F1-X8402LG2N/A16.8CH03d10View
19Apple-FjxPL-F1-2013LG2N/A46.85CH03d10View
20Pear-Bartlett-F1-2007Ba2N/A37.1CH03d10View
21Pear-La_France-F1-2007La2N/A45.9CH03d10View
22Apple-FD-Discovery-F1-2003D2N/A42.2CH03d10View
23Apple-JM7xS63-F1S2N/A46CH03d10View
24Pear-Ba-F1-2013Ba2N/A36.6CH03d10View
25Pear-BD-F1-2015LG2N/A81.2CH03d10View
26Pear-Bayuehong-F1-2015LG2N/A81.49CH03d10View
27Pear-Dangshansuli-F1-2015LG2N/A80.82CH03d10View
28Pear-integrated_consensus_map-IPCG-2017LG2N/A121.58CH03d10View
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Andreas Peil
First name:Andreas
Last name:Peil
Title:Researcher
Institution:Institute for Breeding Research on Fruit
Address:Kulius Kuhn-Institut (JKI), Pillnitzer Platz 3a, 01326
Country:Dresden, Germany
Email:andreas.peil@jki.bund.de
Zhen Han
First name:Zhen
Last name:Han
Institution:Institute for Horticultural Plants, China Agricultural University
Address:Beijing 100193, China
Country:China
Email:rschan@cau.edu.cn
Keywords:apple