CH05c07, CH05c07 (genetic_marker) Malus x domestica

Marker Overview
NameCH05c07
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1CH05c07.primer 1: TGATGCATTAGGGCTTGTACTT
Primer 2CH05c07.primer 2: GGGATGCATTGCTAAATAGGAT
Product Length111-149
111–149
Max Length150 bp
PolymorphismP_ CH05c07
Publication[view all]
ContactC. Gessler
Andreas Peil
Miyuki Kunihisa
Publications
YearPublication
2004Yamamoto T, Kimura T, Saito T, Kotobuki K, Matsuta N, Liebhard R, Gessler C, Weg W.E. van de, Hayashi, T. Genetic linkage maps of Japanese and European pears aligned to the apple consensus map. Acta Horticulturae. 2004; 663:51-56.
2009Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2014Wöhner TW, Flachowsky H, Richter K, Garcia-Libreros T, Trognitz F, Hanke M, Peil A. QTL mapping of fire blight resistance in Malus ×robusta 5 after inoculation with different strains of Erwinia amylovora. Molecular breeding. 2014; 34(1):217-230.
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2014Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Andreas Peil
First name:Andreas
Last name:Peil
Title:Researcher
Institution:Institute for Breeding Research on Fruit
Address:Kulius Kuhn-Institut (JKI), Pillnitzer Platz 3a, 01326
Country:Dresden, Germany
Email:andreas.peil@jki.bund.de
Miyuki Kunihisa
First name:Miyuki
Last name:Kunihisa
Institution:NARO Institute of Fruit Tree Science
Address:2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:Japan
Email:miyuky@affrc.go.jp
Phone:81-29-838-6437
Keywords:fruit drop
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
primer 1CH05c07.primer 1Malus x domesticaprimer
primer 2CH05c07.primer 2Malus x domesticaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CH05c07CH05c07Malus x domesticamarker_locus
CH05c07CH05c07-57.052Malus x domesticamarker_locus
CH05c07CH05c07-54.378Malus x domesticamarker_locus
CH05c07CH05c07-32.5Malus x domesticamarker_locus
CH05c07CH05c07-45.1Malus x domesticamarker_locus
CH05c07CH05c07-27.8Malus x domesticamarker_locus
CH05c07CH05c07-88.27Malus x domesticamarker_locus


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-C16xC17-F1-20129N/A49.64CH05c07View
2Apple-FD-F1-2006D9N/A33CH05c07View
3Pear-BH-F1Ho9N/A0CH05c07View
4Apple Integrated map9N/A38.9CH05c07View
5Pear-BH-F1Ba9N/A25CH05c07View
6Apple-FD-F1-2006F9N/A18.8CH05c07View
7Apple-IM-F1-Mr5Mr5 LG 9N/A35.5CH05c07View
8Pear-PM-F1-PEAR39N/A26.51CH05c07View
9Pear-PM-F1-Moonglow9N/A21.21CH05c07View
10Apple-MM-F19N/A36.8CH05c07View
11Apple-OA-F1-AkaneAK9N/A42.9CH05c07View
12Apple-GDxJ-F1-2012LG9N/A51CH05c07View
13Apple-M432-2012LG9N/A31.1CH05c07View
14Apple-RGTxGD-F1-2015GD_9N/A36.11CH05c07View
15Apple-RGxPI6-F1LG9N/A43.2CH05c07View
16Apple-DP-F1-2013D9N/A36.7CH05c07View
17Apple-DP-F1-2013P9N/A35.9CH05c07View
18Apple-GDxBr-F1-2013LG9N/A41.53CH05c07View
19Pear-Bartlett-F1-2007Ba9N/A23.5CH05c07View
20Pear-La_France-F1-2007La9N/A23.3CH05c07View
21Apple-FD-Discovery-F1-2003D9N/A33.2CH05c07View
22Pear-Rcf-F1-femaleLG9N/A57.05CH05c07View
23Pear-RM-F1-IntegratedLG9N/A54.38CH05c07View
24Apple-JM7xS63-F1J9N/A32.5CH05c07View
25Apple-JM7xS63-F1S9N/A45.1CH05c07View
26Pear-Ba-F1-2013Ba9N/A27.8CH05c07View
27Pear-integrated_consensus_map-IPCG-2017LG9N/A88.27CH05c07View